Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29951 | 5' | -61.3 | NC_006273.1 | + | 35776 | 1.06 | 0.002369 |
Target: 5'- gCUCCGGCCCUGGAAGUCCACGGCCAAg -3' miRNA: 3'- -GAGGCCGGGACCUUCAGGUGCCGGUU- -5' |
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29951 | 5' | -61.3 | NC_006273.1 | + | 45870 | 0.7 | 0.507988 |
Target: 5'- --gCGGCCCUGGAAcUCUcacacagcgcgGCGGCCGGg -3' miRNA: 3'- gagGCCGGGACCUUcAGG-----------UGCCGGUU- -5' |
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29951 | 5' | -61.3 | NC_006273.1 | + | 52760 | 0.67 | 0.699523 |
Target: 5'- -cCCGGCCUcGGccAAGagCGCGGCCAc -3' miRNA: 3'- gaGGCCGGGaCC--UUCagGUGCCGGUu -5' |
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29951 | 5' | -61.3 | NC_006273.1 | + | 55108 | 0.66 | 0.782327 |
Target: 5'- gUUCGGUgCCUGGccAGUCCcuACGGCCu- -3' miRNA: 3'- gAGGCCG-GGACCu-UCAGG--UGCCGGuu -5' |
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29951 | 5' | -61.3 | NC_006273.1 | + | 64396 | 0.66 | 0.782327 |
Target: 5'- gUCCGuaCC-GGAGGUCCugGGUg-- -3' miRNA: 3'- gAGGCcgGGaCCUUCAGGugCCGguu -5' |
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29951 | 5' | -61.3 | NC_006273.1 | + | 79635 | 0.66 | 0.755537 |
Target: 5'- --aUGGUCCccaAAGUCCACGGCCAc -3' miRNA: 3'- gagGCCGGGaccUUCAGGUGCCGGUu -5' |
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29951 | 5' | -61.3 | NC_006273.1 | + | 85666 | 0.73 | 0.364181 |
Target: 5'- -gCCGGCCCaGGAcaugacCCACGGCCGAg -3' miRNA: 3'- gaGGCCGGGaCCUuca---GGUGCCGGUU- -5' |
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29951 | 5' | -61.3 | NC_006273.1 | + | 95025 | 0.67 | 0.699523 |
Target: 5'- gUCCGGCCgccagucgugaCcGGggGUCCcuCGGCCu- -3' miRNA: 3'- gAGGCCGG-----------GaCCuuCAGGu-GCCGGuu -5' |
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29951 | 5' | -61.3 | NC_006273.1 | + | 96080 | 0.72 | 0.403527 |
Target: 5'- -cCUGGCCgaGGcGAGUCCGCGGUCGc -3' miRNA: 3'- gaGGCCGGgaCC-UUCAGGUGCCGGUu -5' |
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29951 | 5' | -61.3 | NC_006273.1 | + | 110117 | 0.69 | 0.612549 |
Target: 5'- gUCCaaagGGCUCguuUGGccAGGUCCACGGCCGu -3' miRNA: 3'- gAGG----CCGGG---ACC--UUCAGGUGCCGGUu -5' |
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29951 | 5' | -61.3 | NC_006273.1 | + | 129304 | 0.66 | 0.7464 |
Target: 5'- aUCUGGCuCCcGGGua-CCGCGGCCGg -3' miRNA: 3'- gAGGCCG-GGaCCUucaGGUGCCGGUu -5' |
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29951 | 5' | -61.3 | NC_006273.1 | + | 130211 | 0.7 | 0.507988 |
Target: 5'- uCUCCGGCuaCCUGGGcgAGgCCGCGGCg-- -3' miRNA: 3'- -GAGGCCG--GGACCU--UCaGGUGCCGguu -5' |
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29951 | 5' | -61.3 | NC_006273.1 | + | 148665 | 0.68 | 0.670722 |
Target: 5'- -gCCGG-CCUGGAGGUCUGCGcGCa-- -3' miRNA: 3'- gaGGCCgGGACCUUCAGGUGC-CGguu -5' |
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29951 | 5' | -61.3 | NC_006273.1 | + | 149714 | 0.76 | 0.229072 |
Target: 5'- gCUCuCGGCCgUGGGucauGUCCugGGCCGg -3' miRNA: 3'- -GAG-GCCGGgACCUu---CAGGugCCGGUu -5' |
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29951 | 5' | -61.3 | NC_006273.1 | + | 160343 | 0.66 | 0.764575 |
Target: 5'- ---gGGCCCgugaggGGGAGUCgUugGGCCGu -3' miRNA: 3'- gaggCCGGGa-----CCUUCAG-GugCCGGUu -5' |
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29951 | 5' | -61.3 | NC_006273.1 | + | 164276 | 0.66 | 0.736246 |
Target: 5'- -aCUGGUgCUGGcggcgccGGGUgCCACGGCCAc -3' miRNA: 3'- gaGGCCGgGACC-------UUCA-GGUGCCGGUu -5' |
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29951 | 5' | -61.3 | NC_006273.1 | + | 167151 | 0.71 | 0.4629 |
Target: 5'- -aCgGGCCgCUGGAAGUCgGCGGgCGGg -3' miRNA: 3'- gaGgCCGG-GACCUUCAGgUGCCgGUU- -5' |
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29951 | 5' | -61.3 | NC_006273.1 | + | 167311 | 0.66 | 0.782327 |
Target: 5'- aCUCCGGCCacagcGGcGGcagCgGCGGCCAc -3' miRNA: 3'- -GAGGCCGGga---CCuUCa--GgUGCCGGUu -5' |
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29951 | 5' | -61.3 | NC_006273.1 | + | 183741 | 0.66 | 0.773508 |
Target: 5'- gCUCCGGCgCaacGGGugcuGUCCGCGccGCCGAg -3' miRNA: 3'- -GAGGCCGgGa--CCUu---CAGGUGC--CGGUU- -5' |
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29951 | 5' | -61.3 | NC_006273.1 | + | 188796 | 0.68 | 0.670722 |
Target: 5'- -gUUGcGCaCCUGGAAGUCCACcaaGGCCu- -3' miRNA: 3'- gaGGC-CG-GGACCUUCAGGUG---CCGGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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