miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29952 5' -57 NC_006273.1 + 234780 0.66 0.945694
Target:  5'- gGCcGCGGACuggGUCCCCgaGCGCGcacccUCCu -3'
miRNA:   3'- -CGcUGUCUG---UAGGGGgaCGUGC-----AGGu -5'
29952 5' -57 NC_006273.1 + 131383 0.66 0.941348
Target:  5'- cGCGACcuGGGCAccaucaUCCCCaC-GCACGccUCCAu -3'
miRNA:   3'- -CGCUG--UCUGU------AGGGG-GaCGUGC--AGGU- -5'
29952 5' -57 NC_006273.1 + 127179 0.66 0.941348
Target:  5'- aGCGGCucgucGGCAUCCauggcgCCCaaacgcgGUACGUCCGa -3'
miRNA:   3'- -CGCUGu----CUGUAGG------GGGa------CGUGCAGGU- -5'
29952 5' -57 NC_006273.1 + 74560 0.66 0.938636
Target:  5'- cCGACAGcaucgccgcagcauGCcgCCCCaauccgccgcccaaCUGCGCGUCCc -3'
miRNA:   3'- cGCUGUC--------------UGuaGGGG--------------GACGUGCAGGu -5'
29952 5' -57 NC_006273.1 + 48508 0.66 0.936784
Target:  5'- -aGACAGACAgaaCCaCCgUGCucguCGUCCc -3'
miRNA:   3'- cgCUGUCUGUa--GG-GGgACGu---GCAGGu -5'
29952 5' -57 NC_006273.1 + 197914 0.66 0.931998
Target:  5'- gGCcacCAGGuCAUCCCgUugUGCGCGUCCGa -3'
miRNA:   3'- -CGcu-GUCU-GUAGGGgG--ACGUGCAGGU- -5'
29952 5' -57 NC_006273.1 + 205029 0.66 0.926992
Target:  5'- cGCGAC-GACAUCCUCucguCUGCugagguGCGUUCGg -3'
miRNA:   3'- -CGCUGuCUGUAGGGG----GACG------UGCAGGU- -5'
29952 5' -57 NC_006273.1 + 12516 0.66 0.926992
Target:  5'- cGCGGCGaauGCGUgCCUCUGCGCacUCCAg -3'
miRNA:   3'- -CGCUGUc--UGUAgGGGGACGUGc-AGGU- -5'
29952 5' -57 NC_006273.1 + 71945 0.66 0.926992
Target:  5'- aGUGGCGGACAUgCgaCUGCugGggggCCAa -3'
miRNA:   3'- -CGCUGUCUGUAgGggGACGugCa---GGU- -5'
29952 5' -57 NC_006273.1 + 187904 0.67 0.921764
Target:  5'- cGCGGCucgccGuCGUUCUCCUGCucuuCGUCCu -3'
miRNA:   3'- -CGCUGu----CuGUAGGGGGACGu---GCAGGu -5'
29952 5' -57 NC_006273.1 + 82941 0.67 0.921764
Target:  5'- cGCGGCaAGcACAUCCgCUUGUACGUggcggCCGa -3'
miRNA:   3'- -CGCUG-UC-UGUAGGgGGACGUGCA-----GGU- -5'
29952 5' -57 NC_006273.1 + 30573 0.67 0.916314
Target:  5'- cGUGACGGGgGuUUCCCCUGaCACGUa-- -3'
miRNA:   3'- -CGCUGUCUgU-AGGGGGAC-GUGCAggu -5'
29952 5' -57 NC_006273.1 + 135012 0.67 0.910645
Target:  5'- cGCGAC-GACGUCUgcgaUCUGCagaaGCGUCCGc -3'
miRNA:   3'- -CGCUGuCUGUAGGg---GGACG----UGCAGGU- -5'
29952 5' -57 NC_006273.1 + 221782 0.67 0.892329
Target:  5'- gGCGugGGGCggCCCuCCaGCACGgcggCCc -3'
miRNA:   3'- -CGCugUCUGuaGGG-GGaCGUGCa---GGu -5'
29952 5' -57 NC_006273.1 + 52323 0.67 0.892329
Target:  5'- cCGACgccuGGAUcaGUCCCCC--CACGUCCAu -3'
miRNA:   3'- cGCUG----UCUG--UAGGGGGacGUGCAGGU- -5'
29952 5' -57 NC_006273.1 + 155134 0.68 0.885798
Target:  5'- -aGACccacGACAU-CCCCUGCcUGUCCAa -3'
miRNA:   3'- cgCUGu---CUGUAgGGGGACGuGCAGGU- -5'
29952 5' -57 NC_006273.1 + 33345 0.68 0.885798
Target:  5'- uGCGGCAGccgcguGCgAUCCUgCgGCGCGUCCc -3'
miRNA:   3'- -CGCUGUC------UG-UAGGGgGaCGUGCAGGu -5'
29952 5' -57 NC_006273.1 + 85099 0.68 0.879058
Target:  5'- uGCGACGGAgAgcacgagCUCCC-GCACGUgCAu -3'
miRNA:   3'- -CGCUGUCUgUa------GGGGGaCGUGCAgGU- -5'
29952 5' -57 NC_006273.1 + 154488 0.68 0.879058
Target:  5'- gGCGAgGGugGuUUUCCCUGCGCcgagaaGUCCGa -3'
miRNA:   3'- -CGCUgUCugU-AGGGGGACGUG------CAGGU- -5'
29952 5' -57 NC_006273.1 + 103843 0.68 0.872115
Target:  5'- uGCGcuccgaGCGGAUcaccgccugGUCCUCCagcccaUGCACGUCCAg -3'
miRNA:   3'- -CGC------UGUCUG---------UAGGGGG------ACGUGCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.