miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29952 5' -57 NC_006273.1 + 34210 1.1 0.003146
Target:  5'- cGCGACAGACAUCCCCCUGCACGUCCAu -3'
miRNA:   3'- -CGCUGUCUGUAGGGGGACGUGCAGGU- -5'
29952 5' -57 NC_006273.1 + 130897 0.77 0.383843
Target:  5'- cCGACGGACcacugcgucuUCCCCCUGCugGUCa- -3'
miRNA:   3'- cGCUGUCUGu---------AGGGGGACGugCAGgu -5'
29952 5' -57 NC_006273.1 + 129600 0.74 0.56183
Target:  5'- cGCGcCGGguuuuacACGUCCCCgUGCACGUUCGc -3'
miRNA:   3'- -CGCuGUC-------UGUAGGGGgACGUGCAGGU- -5'
29952 5' -57 NC_006273.1 + 36875 0.72 0.660897
Target:  5'- uCGuACAGGCAgUCCUCUUGCGCGUCg- -3'
miRNA:   3'- cGC-UGUCUGU-AGGGGGACGUGCAGgu -5'
29952 5' -57 NC_006273.1 + 109509 0.71 0.699929
Target:  5'- cGCG-CGGGCGUgCCUCCUGCAUGcuggCCGu -3'
miRNA:   3'- -CGCuGUCUGUA-GGGGGACGUGCa---GGU- -5'
29952 5' -57 NC_006273.1 + 118860 0.71 0.728676
Target:  5'- cGCGACcGACAacgaaggcugUCCcuggCCCUGCGCGUgCAa -3'
miRNA:   3'- -CGCUGuCUGU----------AGG----GGGACGUGCAgGU- -5'
29952 5' -57 NC_006273.1 + 91152 0.7 0.801332
Target:  5'- cUGGCGGGCGUCCUCgcacagccgaUGCACGUCUc -3'
miRNA:   3'- cGCUGUCUGUAGGGGg---------ACGUGCAGGu -5'
29952 5' -57 NC_006273.1 + 88010 0.7 0.801332
Target:  5'- cCGACAGgucguGCAccUCCCCCccgGCGgCGUCCGu -3'
miRNA:   3'- cGCUGUC-----UGU--AGGGGGa--CGU-GCAGGU- -5'
29952 5' -57 NC_006273.1 + 161492 0.69 0.809859
Target:  5'- aGCGGCAGugGUCCaucuCUgugGCGCGcCCGc -3'
miRNA:   3'- -CGCUGUCugUAGGg---GGa--CGUGCaGGU- -5'
29952 5' -57 NC_006273.1 + 45323 0.69 0.818236
Target:  5'- cCGACGGuguuCGUCCCCCcGC-CGUCgGa -3'
miRNA:   3'- cGCUGUCu---GUAGGGGGaCGuGCAGgU- -5'
29952 5' -57 NC_006273.1 + 116637 0.68 0.850109
Target:  5'- cGCGGCAGACAUCagcagcaCgUUGCG-GUCCGu -3'
miRNA:   3'- -CGCUGUCUGUAGg------GgGACGUgCAGGU- -5'
29952 5' -57 NC_006273.1 + 55682 0.68 0.850109
Target:  5'- uGCG-CAGGC--CCUCCUGCACGaagCCGc -3'
miRNA:   3'- -CGCuGUCUGuaGGGGGACGUGCa--GGU- -5'
29952 5' -57 NC_006273.1 + 170631 0.68 0.855396
Target:  5'- cCGGCGGGCAgcuucuuuugcaacUCgCCUCUagccGCGCGUCCAg -3'
miRNA:   3'- cGCUGUCUGU--------------AG-GGGGA----CGUGCAGGU- -5'
29952 5' -57 NC_006273.1 + 103843 0.68 0.872115
Target:  5'- uGCGcuccgaGCGGAUcaccgccugGUCCUCCagcccaUGCACGUCCAg -3'
miRNA:   3'- -CGC------UGUCUG---------UAGGGGG------ACGUGCAGGU- -5'
29952 5' -57 NC_006273.1 + 154488 0.68 0.879058
Target:  5'- gGCGAgGGugGuUUUCCCUGCGCcgagaaGUCCGa -3'
miRNA:   3'- -CGCUgUCugU-AGGGGGACGUG------CAGGU- -5'
29952 5' -57 NC_006273.1 + 85099 0.68 0.879058
Target:  5'- uGCGACGGAgAgcacgagCUCCC-GCACGUgCAu -3'
miRNA:   3'- -CGCUGUCUgUa------GGGGGaCGUGCAgGU- -5'
29952 5' -57 NC_006273.1 + 155134 0.68 0.885798
Target:  5'- -aGACccacGACAU-CCCCUGCcUGUCCAa -3'
miRNA:   3'- cgCUGu---CUGUAgGGGGACGuGCAGGU- -5'
29952 5' -57 NC_006273.1 + 33345 0.68 0.885798
Target:  5'- uGCGGCAGccgcguGCgAUCCUgCgGCGCGUCCc -3'
miRNA:   3'- -CGCUGUC------UG-UAGGGgGaCGUGCAGGu -5'
29952 5' -57 NC_006273.1 + 221782 0.67 0.892329
Target:  5'- gGCGugGGGCggCCCuCCaGCACGgcggCCc -3'
miRNA:   3'- -CGCugUCUGuaGGG-GGaCGUGCa---GGu -5'
29952 5' -57 NC_006273.1 + 52323 0.67 0.892329
Target:  5'- cCGACgccuGGAUcaGUCCCCC--CACGUCCAu -3'
miRNA:   3'- cGCUG----UCUG--UAGGGGGacGUGCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.