Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29952 | 5' | -57 | NC_006273.1 | + | 170631 | 0.68 | 0.855396 |
Target: 5'- cCGGCGGGCAgcuucuuuugcaacUCgCCUCUagccGCGCGUCCAg -3' miRNA: 3'- cGCUGUCUGU--------------AG-GGGGA----CGUGCAGGU- -5' |
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29952 | 5' | -57 | NC_006273.1 | + | 74560 | 0.66 | 0.938636 |
Target: 5'- cCGACAGcaucgccgcagcauGCcgCCCCaauccgccgcccaaCUGCGCGUCCc -3' miRNA: 3'- cGCUGUC--------------UGuaGGGG--------------GACGUGCAGGu -5' |
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29952 | 5' | -57 | NC_006273.1 | + | 131383 | 0.66 | 0.941348 |
Target: 5'- cGCGACcuGGGCAccaucaUCCCCaC-GCACGccUCCAu -3' miRNA: 3'- -CGCUG--UCUGU------AGGGG-GaCGUGC--AGGU- -5' |
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29952 | 5' | -57 | NC_006273.1 | + | 34210 | 1.1 | 0.003146 |
Target: 5'- cGCGACAGACAUCCCCCUGCACGUCCAu -3' miRNA: 3'- -CGCUGUCUGUAGGGGGACGUGCAGGU- -5' |
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29952 | 5' | -57 | NC_006273.1 | + | 130897 | 0.77 | 0.383843 |
Target: 5'- cCGACGGACcacugcgucuUCCCCCUGCugGUCa- -3' miRNA: 3'- cGCUGUCUGu---------AGGGGGACGugCAGgu -5' |
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29952 | 5' | -57 | NC_006273.1 | + | 109509 | 0.71 | 0.699929 |
Target: 5'- cGCG-CGGGCGUgCCUCCUGCAUGcuggCCGu -3' miRNA: 3'- -CGCuGUCUGUA-GGGGGACGUGCa---GGU- -5' |
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29952 | 5' | -57 | NC_006273.1 | + | 118860 | 0.71 | 0.728676 |
Target: 5'- cGCGACcGACAacgaaggcugUCCcuggCCCUGCGCGUgCAa -3' miRNA: 3'- -CGCUGuCUGU----------AGG----GGGACGUGCAgGU- -5' |
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29952 | 5' | -57 | NC_006273.1 | + | 161492 | 0.69 | 0.809859 |
Target: 5'- aGCGGCAGugGUCCaucuCUgugGCGCGcCCGc -3' miRNA: 3'- -CGCUGUCugUAGGg---GGa--CGUGCaGGU- -5' |
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29952 | 5' | -57 | NC_006273.1 | + | 45323 | 0.69 | 0.818236 |
Target: 5'- cCGACGGuguuCGUCCCCCcGC-CGUCgGa -3' miRNA: 3'- cGCUGUCu---GUAGGGGGaCGuGCAGgU- -5' |
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29952 | 5' | -57 | NC_006273.1 | + | 71945 | 0.66 | 0.926992 |
Target: 5'- aGUGGCGGACAUgCgaCUGCugGggggCCAa -3' miRNA: 3'- -CGCUGUCUGUAgGggGACGugCa---GGU- -5' |
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29952 | 5' | -57 | NC_006273.1 | + | 187904 | 0.67 | 0.921764 |
Target: 5'- cGCGGCucgccGuCGUUCUCCUGCucuuCGUCCu -3' miRNA: 3'- -CGCUGu----CuGUAGGGGGACGu---GCAGGu -5' |
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29952 | 5' | -57 | NC_006273.1 | + | 103843 | 0.68 | 0.872115 |
Target: 5'- uGCGcuccgaGCGGAUcaccgccugGUCCUCCagcccaUGCACGUCCAg -3' miRNA: 3'- -CGC------UGUCUG---------UAGGGGG------ACGUGCAGGU- -5' |
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29952 | 5' | -57 | NC_006273.1 | + | 12516 | 0.66 | 0.926992 |
Target: 5'- cGCGGCGaauGCGUgCCUCUGCGCacUCCAg -3' miRNA: 3'- -CGCUGUc--UGUAgGGGGACGUGc-AGGU- -5' |
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29952 | 5' | -57 | NC_006273.1 | + | 154488 | 0.68 | 0.879058 |
Target: 5'- gGCGAgGGugGuUUUCCCUGCGCcgagaaGUCCGa -3' miRNA: 3'- -CGCUgUCugU-AGGGGGACGUG------CAGGU- -5' |
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29952 | 5' | -57 | NC_006273.1 | + | 82941 | 0.67 | 0.921764 |
Target: 5'- cGCGGCaAGcACAUCCgCUUGUACGUggcggCCGa -3' miRNA: 3'- -CGCUG-UC-UGUAGGgGGACGUGCA-----GGU- -5' |
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29952 | 5' | -57 | NC_006273.1 | + | 205029 | 0.66 | 0.926992 |
Target: 5'- cGCGAC-GACAUCCUCucguCUGCugagguGCGUUCGg -3' miRNA: 3'- -CGCUGuCUGUAGGGG----GACG------UGCAGGU- -5' |
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29952 | 5' | -57 | NC_006273.1 | + | 135012 | 0.67 | 0.910645 |
Target: 5'- cGCGAC-GACGUCUgcgaUCUGCagaaGCGUCCGc -3' miRNA: 3'- -CGCUGuCUGUAGGg---GGACG----UGCAGGU- -5' |
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29952 | 5' | -57 | NC_006273.1 | + | 30573 | 0.67 | 0.916314 |
Target: 5'- cGUGACGGGgGuUUCCCCUGaCACGUa-- -3' miRNA: 3'- -CGCUGUCUgU-AGGGGGAC-GUGCAggu -5' |
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29952 | 5' | -57 | NC_006273.1 | + | 116637 | 0.68 | 0.850109 |
Target: 5'- cGCGGCAGACAUCagcagcaCgUUGCG-GUCCGu -3' miRNA: 3'- -CGCUGUCUGUAGg------GgGACGUgCAGGU- -5' |
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29952 | 5' | -57 | NC_006273.1 | + | 155134 | 0.68 | 0.885798 |
Target: 5'- -aGACccacGACAU-CCCCUGCcUGUCCAa -3' miRNA: 3'- cgCUGu---CUGUAgGGGGACGuGCAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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