miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29954 3' -44.6 NC_006273.1 + 166742 0.66 0.999999
Target:  5'- gGCGCUCUCGaCAG-CUUGc-- -3'
miRNA:   3'- -UGCGAGAGCaGUCcGAACagu -5'
29954 3' -44.6 NC_006273.1 + 199737 0.66 0.999999
Target:  5'- -gGCUCUCGUUcGGCgaGUUu -3'
miRNA:   3'- ugCGAGAGCAGuCCGaaCAGu -5'
29954 3' -44.6 NC_006273.1 + 142026 0.66 0.999999
Target:  5'- gACGUgggCUUGUCAGGg--GUCAc -3'
miRNA:   3'- -UGCGa--GAGCAGUCCgaaCAGU- -5'
29954 3' -44.6 NC_006273.1 + 149512 0.66 0.999999
Target:  5'- gGCGCUUguugCG-CGGGCUgcgucGUCAc -3'
miRNA:   3'- -UGCGAGa---GCaGUCCGAa----CAGU- -5'
29954 3' -44.6 NC_006273.1 + 190907 0.66 0.999999
Target:  5'- cCGCUCgcccgUUGUCGcgcGGCUUGUUAu -3'
miRNA:   3'- uGCGAG-----AGCAGU---CCGAACAGU- -5'
29954 3' -44.6 NC_006273.1 + 104552 0.67 0.999996
Target:  5'- cGCGCUCgUCGUCGGGagcgcgGUgGa -3'
miRNA:   3'- -UGCGAG-AGCAGUCCgaa---CAgU- -5'
29954 3' -44.6 NC_006273.1 + 131243 0.67 0.999992
Target:  5'- cGCGCUCUCGUCcaucGCcgcGUCGg -3'
miRNA:   3'- -UGCGAGAGCAGuc--CGaa-CAGU- -5'
29954 3' -44.6 NC_006273.1 + 45842 0.67 0.999985
Target:  5'- -gGCUCggCGUCGGGCUccUCGg -3'
miRNA:   3'- ugCGAGa-GCAGUCCGAacAGU- -5'
29954 3' -44.6 NC_006273.1 + 118278 0.67 0.999983
Target:  5'- cGCGCUC-CGUCAcgccgacuaguuGCUUGUCGu -3'
miRNA:   3'- -UGCGAGaGCAGUc-----------CGAACAGU- -5'
29954 3' -44.6 NC_006273.1 + 80971 0.68 0.999968
Target:  5'- -aGCUgUCGUCGGGCacggccaccagGUCAg -3'
miRNA:   3'- ugCGAgAGCAGUCCGaa---------CAGU- -5'
29954 3' -44.6 NC_006273.1 + 2889 0.68 0.999959
Target:  5'- uACGcCUCUgGUguGGCgcggUGUCGu -3'
miRNA:   3'- -UGC-GAGAgCAguCCGa---ACAGU- -5'
29954 3' -44.6 NC_006273.1 + 76670 0.68 0.999959
Target:  5'- cACGUcCUgCGUCAGGCgggcGUCAc -3'
miRNA:   3'- -UGCGaGA-GCAGUCCGaa--CAGU- -5'
29954 3' -44.6 NC_006273.1 + 145275 0.69 0.999926
Target:  5'- cACGggCUUGUCGGGUUcGUCGa -3'
miRNA:   3'- -UGCgaGAGCAGUCCGAaCAGU- -5'
29954 3' -44.6 NC_006273.1 + 205619 0.69 0.999926
Target:  5'- uGCGCg--CGUCGGGCUgcgcgccGUCGa -3'
miRNA:   3'- -UGCGagaGCAGUCCGAa------CAGU- -5'
29954 3' -44.6 NC_006273.1 + 49291 0.71 0.998896
Target:  5'- cGCGCUCUCaucucuUCAGaCUUGUCAu -3'
miRNA:   3'- -UGCGAGAGc-----AGUCcGAACAGU- -5'
29954 3' -44.6 NC_006273.1 + 187626 0.72 0.998
Target:  5'- aGCGCUUgggUGUCAGGCccGUCu -3'
miRNA:   3'- -UGCGAGa--GCAGUCCGaaCAGu -5'
29954 3' -44.6 NC_006273.1 + 131980 0.73 0.995924
Target:  5'- aACGCUCccUGUCcGGCUUGUUAc -3'
miRNA:   3'- -UGCGAGa-GCAGuCCGAACAGU- -5'
29954 3' -44.6 NC_006273.1 + 56186 0.73 0.995194
Target:  5'- gACGCUgUCGUCcGGCcaGUCAa -3'
miRNA:   3'- -UGCGAgAGCAGuCCGaaCAGU- -5'
29954 3' -44.6 NC_006273.1 + 199293 0.75 0.978067
Target:  5'- cGCGCUCUUGUgucucccgaCAGGCUcGUCGu -3'
miRNA:   3'- -UGCGAGAGCA---------GUCCGAaCAGU- -5'
29954 3' -44.6 NC_006273.1 + 33275 1.06 0.055769
Target:  5'- aACGCUCUCGUCAGGCUUGUCAu -3'
miRNA:   3'- -UGCGAGAGCAGUCCGAACAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.