Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29954 | 3' | -44.6 | NC_006273.1 | + | 166742 | 0.66 | 0.999999 |
Target: 5'- gGCGCUCUCGaCAG-CUUGc-- -3' miRNA: 3'- -UGCGAGAGCaGUCcGAACagu -5' |
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29954 | 3' | -44.6 | NC_006273.1 | + | 49291 | 0.71 | 0.998896 |
Target: 5'- cGCGCUCUCaucucuUCAGaCUUGUCAu -3' miRNA: 3'- -UGCGAGAGc-----AGUCcGAACAGU- -5' |
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29954 | 3' | -44.6 | NC_006273.1 | + | 145275 | 0.69 | 0.999926 |
Target: 5'- cACGggCUUGUCGGGUUcGUCGa -3' miRNA: 3'- -UGCgaGAGCAGUCCGAaCAGU- -5' |
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29954 | 3' | -44.6 | NC_006273.1 | + | 205619 | 0.69 | 0.999926 |
Target: 5'- uGCGCg--CGUCGGGCUgcgcgccGUCGa -3' miRNA: 3'- -UGCGagaGCAGUCCGAa------CAGU- -5' |
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29954 | 3' | -44.6 | NC_006273.1 | + | 118278 | 0.67 | 0.999983 |
Target: 5'- cGCGCUC-CGUCAcgccgacuaguuGCUUGUCGu -3' miRNA: 3'- -UGCGAGaGCAGUc-----------CGAACAGU- -5' |
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29954 | 3' | -44.6 | NC_006273.1 | + | 45842 | 0.67 | 0.999985 |
Target: 5'- -gGCUCggCGUCGGGCUccUCGg -3' miRNA: 3'- ugCGAGa-GCAGUCCGAacAGU- -5' |
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29954 | 3' | -44.6 | NC_006273.1 | + | 104552 | 0.67 | 0.999996 |
Target: 5'- cGCGCUCgUCGUCGGGagcgcgGUgGa -3' miRNA: 3'- -UGCGAG-AGCAGUCCgaa---CAgU- -5' |
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29954 | 3' | -44.6 | NC_006273.1 | + | 199737 | 0.66 | 0.999999 |
Target: 5'- -gGCUCUCGUUcGGCgaGUUu -3' miRNA: 3'- ugCGAGAGCAGuCCGaaCAGu -5' |
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29954 | 3' | -44.6 | NC_006273.1 | + | 142026 | 0.66 | 0.999999 |
Target: 5'- gACGUgggCUUGUCAGGg--GUCAc -3' miRNA: 3'- -UGCGa--GAGCAGUCCgaaCAGU- -5' |
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29954 | 3' | -44.6 | NC_006273.1 | + | 187626 | 0.72 | 0.998 |
Target: 5'- aGCGCUUgggUGUCAGGCccGUCu -3' miRNA: 3'- -UGCGAGa--GCAGUCCGaaCAGu -5' |
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29954 | 3' | -44.6 | NC_006273.1 | + | 131980 | 0.73 | 0.995924 |
Target: 5'- aACGCUCccUGUCcGGCUUGUUAc -3' miRNA: 3'- -UGCGAGa-GCAGuCCGAACAGU- -5' |
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29954 | 3' | -44.6 | NC_006273.1 | + | 199293 | 0.75 | 0.978067 |
Target: 5'- cGCGCUCUUGUgucucccgaCAGGCUcGUCGu -3' miRNA: 3'- -UGCGAGAGCA---------GUCCGAaCAGU- -5' |
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29954 | 3' | -44.6 | NC_006273.1 | + | 33275 | 1.06 | 0.055769 |
Target: 5'- aACGCUCUCGUCAGGCUUGUCAu -3' miRNA: 3'- -UGCGAGAGCAGUCCGAACAGU- -5' |
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29954 | 3' | -44.6 | NC_006273.1 | + | 2889 | 0.68 | 0.999959 |
Target: 5'- uACGcCUCUgGUguGGCgcggUGUCGu -3' miRNA: 3'- -UGC-GAGAgCAguCCGa---ACAGU- -5' |
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29954 | 3' | -44.6 | NC_006273.1 | + | 76670 | 0.68 | 0.999959 |
Target: 5'- cACGUcCUgCGUCAGGCgggcGUCAc -3' miRNA: 3'- -UGCGaGA-GCAGUCCGaa--CAGU- -5' |
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29954 | 3' | -44.6 | NC_006273.1 | + | 80971 | 0.68 | 0.999968 |
Target: 5'- -aGCUgUCGUCGGGCacggccaccagGUCAg -3' miRNA: 3'- ugCGAgAGCAGUCCGaa---------CAGU- -5' |
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29954 | 3' | -44.6 | NC_006273.1 | + | 131243 | 0.67 | 0.999992 |
Target: 5'- cGCGCUCUCGUCcaucGCcgcGUCGg -3' miRNA: 3'- -UGCGAGAGCAGuc--CGaa-CAGU- -5' |
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29954 | 3' | -44.6 | NC_006273.1 | + | 190907 | 0.66 | 0.999999 |
Target: 5'- cCGCUCgcccgUUGUCGcgcGGCUUGUUAu -3' miRNA: 3'- uGCGAG-----AGCAGU---CCGAACAGU- -5' |
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29954 | 3' | -44.6 | NC_006273.1 | + | 149512 | 0.66 | 0.999999 |
Target: 5'- gGCGCUUguugCG-CGGGCUgcgucGUCAc -3' miRNA: 3'- -UGCGAGa---GCaGUCCGAa----CAGU- -5' |
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29954 | 3' | -44.6 | NC_006273.1 | + | 56186 | 0.73 | 0.995194 |
Target: 5'- gACGCUgUCGUCcGGCcaGUCAa -3' miRNA: 3'- -UGCGAgAGCAGuCCGaaCAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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