miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29956 5' -50.9 NC_006273.1 + 148175 0.68 0.988287
Target:  5'- cCCgAAGUGCAcgAGCCgCGUGUGGUcacgcauGCCGc -3'
miRNA:   3'- uGG-UUUACGU--UUGG-GUACACCA-------CGGU- -5'
29956 5' -50.9 NC_006273.1 + 146680 0.68 0.983336
Target:  5'- uCCAAAgaagGC--GCCCAgGUGGUaGCCAa -3'
miRNA:   3'- uGGUUUa---CGuuUGGGUaCACCA-CGGU- -5'
29956 5' -50.9 NC_006273.1 + 193770 0.68 0.983336
Target:  5'- aGCCAGgggcuggguGUGCgAAACCgGUGUGGaaGCCGa -3'
miRNA:   3'- -UGGUU---------UACG-UUUGGgUACACCa-CGGU- -5'
29956 5' -50.9 NC_006273.1 + 145389 0.69 0.979095
Target:  5'- -gCGGGUGCGcACCCGcuugcccGUGGUGCCc -3'
miRNA:   3'- ugGUUUACGUuUGGGUa------CACCACGGu -5'
29956 5' -50.9 NC_006273.1 + 194142 0.69 0.974102
Target:  5'- gACCGcugagGCGAGCUgCGUGUGcGUGCCGu -3'
miRNA:   3'- -UGGUuua--CGUUUGG-GUACAC-CACGGU- -5'
29956 5' -50.9 NC_006273.1 + 203854 0.7 0.95794
Target:  5'- aGCCGGA-GCAuGCCCcgGUGGUucucguugaGCCGc -3'
miRNA:   3'- -UGGUUUaCGUuUGGGuaCACCA---------CGGU- -5'
29956 5' -50.9 NC_006273.1 + 205339 0.7 0.954026
Target:  5'- gGCCAGGUGUu-GCCCGUGgucUGGccGCCGg -3'
miRNA:   3'- -UGGUUUACGuuUGGGUAC---ACCa-CGGU- -5'
29956 5' -50.9 NC_006273.1 + 82408 0.71 0.949873
Target:  5'- cACCAGGUGCugcgcGACCCGUGc-GUGCUg -3'
miRNA:   3'- -UGGUUUACGu----UUGGGUACacCACGGu -5'
29956 5' -50.9 NC_006273.1 + 158482 0.71 0.940837
Target:  5'- cGCCAGGUGCAcuuuGCCUuUGUaGGUGCg- -3'
miRNA:   3'- -UGGUUUACGUu---UGGGuACA-CCACGgu -5'
29956 5' -50.9 NC_006273.1 + 90928 0.71 0.935948
Target:  5'- cGCCGGcgcGCGAGCCCGUGUaGUGCgAg -3'
miRNA:   3'- -UGGUUua-CGUUUGGGUACAcCACGgU- -5'
29956 5' -50.9 NC_006273.1 + 170508 0.73 0.880767
Target:  5'- uCCAGGUcGCAcgUCUcgGUGGUGCCGu -3'
miRNA:   3'- uGGUUUA-CGUuuGGGuaCACCACGGU- -5'
29956 5' -50.9 NC_006273.1 + 29443 0.74 0.847644
Target:  5'- uGCCAAacuuauuauguagaGUGCGAACCCcgGUGccucGUGCCu -3'
miRNA:   3'- -UGGUU--------------UACGUUUGGGuaCAC----CACGGu -5'
29956 5' -50.9 NC_006273.1 + 167837 0.74 0.824877
Target:  5'- gGCCAGGgacuUGCAGAUgCGUGUGGaGCCGu -3'
miRNA:   3'- -UGGUUU----ACGUUUGgGUACACCaCGGU- -5'
29956 5' -50.9 NC_006273.1 + 31891 1.09 0.011201
Target:  5'- cACCAAAUGCAAACCCAUGUGGUGCCAg -3'
miRNA:   3'- -UGGUUUACGUUUGGGUACACCACGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.