miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29956 5' -50.9 NC_006273.1 + 167837 0.74 0.824877
Target:  5'- gGCCAGGgacuUGCAGAUgCGUGUGGaGCCGu -3'
miRNA:   3'- -UGGUUU----ACGUUUGgGUACACCaCGGU- -5'
29956 5' -50.9 NC_006273.1 + 126369 0.66 0.998121
Target:  5'- gGCCGugAGUGCGAAuCCCggGUGGaugugcGCCu -3'
miRNA:   3'- -UGGU--UUACGUUU-GGGuaCACCa-----CGGu -5'
29956 5' -50.9 NC_006273.1 + 127746 0.66 0.998018
Target:  5'- cCCAGGUGCGcaguucguggaaggGGCCC----GGUGCCAg -3'
miRNA:   3'- uGGUUUACGU--------------UUGGGuacaCCACGGU- -5'
29956 5' -50.9 NC_006273.1 + 195603 0.66 0.997759
Target:  5'- uCCAGAUGCAcGGCCCcaagGcGGcGCCAg -3'
miRNA:   3'- uGGUUUACGU-UUGGGua--CaCCaCGGU- -5'
29956 5' -50.9 NC_006273.1 + 52228 0.66 0.996858
Target:  5'- -gCAGAUGCAcacguagaGACCCGaGUcGUGCCGc -3'
miRNA:   3'- ugGUUUACGU--------UUGGGUaCAcCACGGU- -5'
29956 5' -50.9 NC_006273.1 + 216477 0.66 0.996306
Target:  5'- uCCAGAgcgcucucuagcUGCGAGCgUGUGaUGGUGCCc -3'
miRNA:   3'- uGGUUU------------ACGUUUGgGUAC-ACCACGGu -5'
29956 5' -50.9 NC_006273.1 + 92848 0.66 0.995938
Target:  5'- gACCAucAGUGCAGgaagcgagGCCCGUagaaccgcccaagagGcGGUGCCAg -3'
miRNA:   3'- -UGGU--UUACGUU--------UGGGUA---------------CaCCACGGU- -5'
29956 5' -50.9 NC_006273.1 + 142028 0.66 0.995677
Target:  5'- aACCA---GCGucGGCCC--GUGGUGCCGu -3'
miRNA:   3'- -UGGUuuaCGU--UUGGGuaCACCACGGU- -5'
29956 5' -50.9 NC_006273.1 + 61245 0.66 0.995677
Target:  5'- -gCAGAUGCGGGCCCA---GGUccaGCCAc -3'
miRNA:   3'- ugGUUUACGUUUGGGUacaCCA---CGGU- -5'
29956 5' -50.9 NC_006273.1 + 90674 0.67 0.994963
Target:  5'- cCCAAGUaGC--GCUUAUGUGGcGCCAg -3'
miRNA:   3'- uGGUUUA-CGuuUGGGUACACCaCGGU- -5'
29956 5' -50.9 NC_006273.1 + 194142 0.69 0.974102
Target:  5'- gACCGcugagGCGAGCUgCGUGUGcGUGCCGu -3'
miRNA:   3'- -UGGUuua--CGUUUGG-GUACAC-CACGGU- -5'
29956 5' -50.9 NC_006273.1 + 146680 0.68 0.983336
Target:  5'- uCCAAAgaagGC--GCCCAgGUGGUaGCCAa -3'
miRNA:   3'- uGGUUUa---CGuuUGGGUaCACCA-CGGU- -5'
29956 5' -50.9 NC_006273.1 + 193770 0.68 0.983336
Target:  5'- aGCCAGgggcuggguGUGCgAAACCgGUGUGGaaGCCGa -3'
miRNA:   3'- -UGGUU---------UACG-UUUGGgUACACCa-CGGU- -5'
29956 5' -50.9 NC_006273.1 + 148175 0.68 0.988287
Target:  5'- cCCgAAGUGCAcgAGCCgCGUGUGGUcacgcauGCCGc -3'
miRNA:   3'- uGG-UUUACGU--UUGG-GUACACCA-------CGGU- -5'
29956 5' -50.9 NC_006273.1 + 115904 0.68 0.988435
Target:  5'- gACCg---GCAGGCCgGUGUGGcGCUg -3'
miRNA:   3'- -UGGuuuaCGUUUGGgUACACCaCGGu -5'
29956 5' -50.9 NC_006273.1 + 144047 0.67 0.99223
Target:  5'- cGCCAAGaugcUGCGGGCCCAc--GGUacGCCAg -3'
miRNA:   3'- -UGGUUU----ACGUUUGGGUacaCCA--CGGU- -5'
29956 5' -50.9 NC_006273.1 + 103484 0.67 0.99449
Target:  5'- cGCCAGcUGCGuggaggugccgaagaAGCCCGccagGUGcGUGCCGu -3'
miRNA:   3'- -UGGUUuACGU---------------UUGGGUa---CAC-CACGGU- -5'
29956 5' -50.9 NC_006273.1 + 117615 0.66 0.998121
Target:  5'- cGCCGAcgGUAAuagGCCgGUGaUGGUGgCGg -3'
miRNA:   3'- -UGGUUuaCGUU---UGGgUAC-ACCACgGU- -5'
29956 5' -50.9 NC_006273.1 + 29443 0.74 0.847644
Target:  5'- uGCCAAacuuauuauguagaGUGCGAACCCcgGUGccucGUGCCu -3'
miRNA:   3'- -UGGUU--------------UACGUUUGGGuaCAC----CACGGu -5'
29956 5' -50.9 NC_006273.1 + 170508 0.73 0.880767
Target:  5'- uCCAGGUcGCAcgUCUcgGUGGUGCCGu -3'
miRNA:   3'- uGGUUUA-CGUuuGGGuaCACCACGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.