miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29957 3' -49.6 NC_006273.1 + 90558 0.66 0.999502
Target:  5'- -cGACGG-GgUUUcgCGUUCACCG-Cg -3'
miRNA:   3'- aaUUGCCaCgAAAuaGCGAGUGGCaG- -5'
29957 3' -49.6 NC_006273.1 + 17168 0.66 0.999502
Target:  5'- -cGACGGccgcgccaUGCcg-GUCGUcCGCCGUCg -3'
miRNA:   3'- aaUUGCC--------ACGaaaUAGCGaGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 17758 0.66 0.999502
Target:  5'- -cAGCGc-GCUUUAUcCGaCUCGCUGUCg -3'
miRNA:   3'- aaUUGCcaCGAAAUA-GC-GAGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 92747 0.66 0.999502
Target:  5'- -aGGCGGUaGCUcucGUCGCUCA-UGUCc -3'
miRNA:   3'- aaUUGCCA-CGAaa-UAGCGAGUgGCAG- -5'
29957 3' -49.6 NC_006273.1 + 130749 0.66 0.999491
Target:  5'- --uACGGUGUUucUUgcgcuccgaggacGUCGCggcuaUCACCGUCa -3'
miRNA:   3'- aauUGCCACGA--AA-------------UAGCG-----AGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 123324 0.66 0.999383
Target:  5'- -cAGCGcGUGUcgUA-CGCgCACCGUCa -3'
miRNA:   3'- aaUUGC-CACGaaAUaGCGaGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 102324 0.66 0.999383
Target:  5'- -aAACGGUGauaag-CGCUggccaccaCACCGUCa -3'
miRNA:   3'- aaUUGCCACgaaauaGCGA--------GUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 104925 0.66 0.999068
Target:  5'- ----aGGUGCUcagGUgGCaCACCGUCu -3'
miRNA:   3'- aauugCCACGAaa-UAgCGaGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 68125 0.66 0.999068
Target:  5'- cUAGCGaGcgGCUagAUCGCUCGCUG-Cg -3'
miRNA:   3'- aAUUGC-Ca-CGAaaUAGCGAGUGGCaG- -5'
29957 3' -49.6 NC_006273.1 + 40749 0.66 0.998865
Target:  5'- --cGCGGUGUUUUuuuUCGCggaccagCGCCGg- -3'
miRNA:   3'- aauUGCCACGAAAu--AGCGa------GUGGCag -5'
29957 3' -49.6 NC_006273.1 + 811 0.66 0.998865
Target:  5'- --cGCGGUGUUUUuuuUCGCggaccagCGCCGg- -3'
miRNA:   3'- aauUGCCACGAAAu--AGCGa------GUGGCag -5'
29957 3' -49.6 NC_006273.1 + 45828 0.67 0.998625
Target:  5'- --cAUGGUGUggcUGUgGCUCGgCGUCg -3'
miRNA:   3'- aauUGCCACGaa-AUAgCGAGUgGCAG- -5'
29957 3' -49.6 NC_006273.1 + 142722 0.67 0.998625
Target:  5'- -cGAUGGUGUa----CGCUCGCCGcCa -3'
miRNA:   3'- aaUUGCCACGaaauaGCGAGUGGCaG- -5'
29957 3' -49.6 NC_006273.1 + 91901 0.67 0.998343
Target:  5'- -aAACGGUGUUUucUGUC-CU-ACCGUCa -3'
miRNA:   3'- aaUUGCCACGAA--AUAGcGAgUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 173529 0.67 0.998343
Target:  5'- -cGGCGGcguacaGCgg-GUCGCgCGCCGUCu -3'
miRNA:   3'- aaUUGCCa-----CGaaaUAGCGaGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 129331 0.67 0.998343
Target:  5'- gUGACGGUGgUcaacacuUCGCacacCACCGUCu -3'
miRNA:   3'- aAUUGCCACgAaau----AGCGa---GUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 184434 0.67 0.998343
Target:  5'- -cGGCGGUGCUgg--CG-UCACCGg- -3'
miRNA:   3'- aaUUGCCACGAaauaGCgAGUGGCag -5'
29957 3' -49.6 NC_006273.1 + 71566 0.67 0.997979
Target:  5'- gUGACGGUGUUUUucguccCGCUuguuggcCACCGUg -3'
miRNA:   3'- aAUUGCCACGAAAua----GCGA-------GUGGCAg -5'
29957 3' -49.6 NC_006273.1 + 189227 0.67 0.997507
Target:  5'- -gGGCGGUcGCUagcgUGUCGCagcguucgccaccgUUGCCGUCg -3'
miRNA:   3'- aaUUGCCA-CGAa---AUAGCG--------------AGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 222983 0.67 0.997192
Target:  5'- -cAGCGGcgUGCgc-AUCuGCUCGCCGUa -3'
miRNA:   3'- aaUUGCC--ACGaaaUAG-CGAGUGGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.