Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29957 | 3' | -49.6 | NC_006273.1 | + | 28667 | 1.09 | 0.015856 |
Target: 5'- aUUAACGGUGCUUUAUCGCUCACCGUCa -3' miRNA: 3'- -AAUUGCCACGAAAUAGCGAGUGGCAG- -5' |
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29957 | 3' | -49.6 | NC_006273.1 | + | 162974 | 0.74 | 0.890979 |
Target: 5'- -gAGCGGUGgUUUcGUCGCcgucgucgacgUCGCCGUCg -3' miRNA: 3'- aaUUGCCACgAAA-UAGCG-----------AGUGGCAG- -5' |
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29957 | 3' | -49.6 | NC_006273.1 | + | 39042 | 0.74 | 0.897786 |
Target: 5'- -gGAUGGccgGCcUUGUCGCcCACCGUCg -3' miRNA: 3'- aaUUGCCa--CGaAAUAGCGaGUGGCAG- -5' |
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29957 | 3' | -49.6 | NC_006273.1 | + | 233935 | 0.74 | 0.897786 |
Target: 5'- -gGAUGGccgGCcUUGUCGCcCACCGUCg -3' miRNA: 3'- aaUUGCCa--CGaAAUAGCGaGUGGCAG- -5' |
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29957 | 3' | -49.6 | NC_006273.1 | + | 206679 | 0.74 | 0.91066 |
Target: 5'- aUAGCGGUGCgcagcaGgUCGCCGUCc -3' miRNA: 3'- aAUUGCCACGaaauagCgAGUGGCAG- -5' |
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29957 | 3' | -49.6 | NC_006273.1 | + | 114009 | 0.73 | 0.917314 |
Target: 5'- gUGGCGGUGUUguaauuuccaccacgUGUCGCUCGCUG-Ca -3' miRNA: 3'- aAUUGCCACGAa--------------AUAGCGAGUGGCaG- -5' |
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29957 | 3' | -49.6 | NC_006273.1 | + | 101152 | 0.72 | 0.956127 |
Target: 5'- gUGAUGGUGCg-----GUUCGCCGUCa -3' miRNA: 3'- aAUUGCCACGaaauagCGAGUGGCAG- -5' |
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29957 | 3' | -49.6 | NC_006273.1 | + | 88486 | 0.72 | 0.958444 |
Target: 5'- --uACGGUGCaguuccgcaCGCUCAUCGUCa -3' miRNA: 3'- aauUGCCACGaaaua----GCGAGUGGCAG- -5' |
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29957 | 3' | -49.6 | NC_006273.1 | + | 118825 | 0.71 | 0.96352 |
Target: 5'- --uGCGGcgUGCUgca-CGCUCACCGUUa -3' miRNA: 3'- aauUGCC--ACGAaauaGCGAGUGGCAG- -5' |
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29957 | 3' | -49.6 | NC_006273.1 | + | 133053 | 0.71 | 0.975605 |
Target: 5'- uUUGACGGUGUggUGgccagCGCuuaUCACCGUUu -3' miRNA: 3'- -AAUUGCCACGaaAUa----GCG---AGUGGCAG- -5' |
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29957 | 3' | -49.6 | NC_006273.1 | + | 189912 | 0.7 | 0.980407 |
Target: 5'- -cGACGGUGgUUgugaaCUCACCGUCg -3' miRNA: 3'- aaUUGCCACgAAauagcGAGUGGCAG- -5' |
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29957 | 3' | -49.6 | NC_006273.1 | + | 225788 | 0.7 | 0.980407 |
Target: 5'- ---uCGGUGCUUUcgugauccCGCUCAgCGUCa -3' miRNA: 3'- aauuGCCACGAAAua------GCGAGUgGCAG- -5' |
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29957 | 3' | -49.6 | NC_006273.1 | + | 213130 | 0.7 | 0.980407 |
Target: 5'- -cGGCGGaGCcgcGUCGCUCGCCGg- -3' miRNA: 3'- aaUUGCCaCGaaaUAGCGAGUGGCag -5' |
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29957 | 3' | -49.6 | NC_006273.1 | + | 161250 | 0.7 | 0.982525 |
Target: 5'- ----aGGUGaacgaGUCGCUCAUCGUCa -3' miRNA: 3'- aauugCCACgaaa-UAGCGAGUGGCAG- -5' |
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29957 | 3' | -49.6 | NC_006273.1 | + | 123781 | 0.7 | 0.986238 |
Target: 5'- ----aGGUGCUUg--CGCUUACCGaUCc -3' miRNA: 3'- aauugCCACGAAauaGCGAGUGGC-AG- -5' |
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29957 | 3' | -49.6 | NC_006273.1 | + | 64117 | 0.69 | 0.987851 |
Target: 5'- --cGCGGUGCaacgcgCGCUaGCCGUCu -3' miRNA: 3'- aauUGCCACGaaaua-GCGAgUGGCAG- -5' |
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29957 | 3' | -49.6 | NC_006273.1 | + | 102982 | 0.69 | 0.990123 |
Target: 5'- -aGACGGUGU---GUCGCgccagaccggagaCGCCGUCg -3' miRNA: 3'- aaUUGCCACGaaaUAGCGa------------GUGGCAG- -5' |
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29957 | 3' | -49.6 | NC_006273.1 | + | 170107 | 0.69 | 0.990636 |
Target: 5'- -cGGCGGUGgUcgUUGUCGCU-GCCGUg -3' miRNA: 3'- aaUUGCCACgA--AAUAGCGAgUGGCAg -5' |
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29957 | 3' | -49.6 | NC_006273.1 | + | 179482 | 0.69 | 0.991825 |
Target: 5'- --uGCGGUGUaaaaaacugUUGUgggCGUUCACCGUCg -3' miRNA: 3'- aauUGCCACGa--------AAUA---GCGAGUGGCAG- -5' |
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29957 | 3' | -49.6 | NC_006273.1 | + | 117524 | 0.69 | 0.992892 |
Target: 5'- gUGACGGUGCUgcuucugCGaCUgaccacggugacCACCGUCg -3' miRNA: 3'- aAUUGCCACGAaaua---GC-GA------------GUGGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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