miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29957 3' -49.6 NC_006273.1 + 58782 0.67 0.997192
Target:  5'- -aAAauGUGCa--AUCGCuUCACCGUCg -3'
miRNA:   3'- aaUUgcCACGaaaUAGCG-AGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 3735 0.68 0.996684
Target:  5'- --cAUGGUGUUUUGaCGCuuuaUCACCGUUu -3'
miRNA:   3'- aauUGCCACGAAAUaGCG----AGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 226501 0.68 0.996104
Target:  5'- gUGACGGUGggUUucGUCGCgccCACgGUCc -3'
miRNA:   3'- aAUUGCCACgaAA--UAGCGa--GUGgCAG- -5'
29957 3' -49.6 NC_006273.1 + 192976 0.68 0.996104
Target:  5'- ---uUGG-GCgcg--CGCUCGCCGUCg -3'
miRNA:   3'- aauuGCCaCGaaauaGCGAGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 70140 0.68 0.994692
Target:  5'- -cAGCGaGUGCggcgAUgGCUCGCCGg- -3'
miRNA:   3'- aaUUGC-CACGaaa-UAgCGAGUGGCag -5'
29957 3' -49.6 NC_006273.1 + 92599 0.68 0.993845
Target:  5'- -cGACGGcgGCUgcUGUUGCUCGCCa-- -3'
miRNA:   3'- aaUUGCCa-CGAa-AUAGCGAGUGGcag -5'
29957 3' -49.6 NC_006273.1 + 192616 0.68 0.993754
Target:  5'- -cGGCGGUGCagaaugCgacucgcggcguaGCUCGCCGUCg -3'
miRNA:   3'- aaUUGCCACGaaaua-G-------------CGAGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 215208 0.68 0.993477
Target:  5'- cUGACGGUGCUUucugcagUGUguggugauucggcaCGUUCugCGUCc -3'
miRNA:   3'- aAUUGCCACGAA-------AUA--------------GCGAGugGCAG- -5'
29957 3' -49.6 NC_006273.1 + 195108 0.69 0.992892
Target:  5'- -aAACGGUgGCUU--UCGaCUUAUCGUCg -3'
miRNA:   3'- aaUUGCCA-CGAAauAGC-GAGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 117524 0.69 0.992892
Target:  5'- gUGACGGUGCUgcuucugCGaCUgaccacggugacCACCGUCg -3'
miRNA:   3'- aAUUGCCACGAaaua---GC-GA------------GUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 153606 0.69 0.992892
Target:  5'- -cGGCGGUGCg--GUCGCggguggcCGgCGUCa -3'
miRNA:   3'- aaUUGCCACGaaaUAGCGa------GUgGCAG- -5'
29957 3' -49.6 NC_006273.1 + 179482 0.69 0.991825
Target:  5'- --uGCGGUGUaaaaaacugUUGUgggCGUUCACCGUCg -3'
miRNA:   3'- aauUGCCACGa--------AAUA---GCGAGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 170107 0.69 0.990636
Target:  5'- -cGGCGGUGgUcgUUGUCGCU-GCCGUg -3'
miRNA:   3'- aaUUGCCACgA--AAUAGCGAgUGGCAg -5'
29957 3' -49.6 NC_006273.1 + 102982 0.69 0.990123
Target:  5'- -aGACGGUGU---GUCGCgccagaccggagaCGCCGUCg -3'
miRNA:   3'- aaUUGCCACGaaaUAGCGa------------GUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 64117 0.69 0.987851
Target:  5'- --cGCGGUGCaacgcgCGCUaGCCGUCu -3'
miRNA:   3'- aauUGCCACGaaaua-GCGAgUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 123781 0.7 0.986238
Target:  5'- ----aGGUGCUUg--CGCUUACCGaUCc -3'
miRNA:   3'- aauugCCACGAAauaGCGAGUGGC-AG- -5'
29957 3' -49.6 NC_006273.1 + 161250 0.7 0.982525
Target:  5'- ----aGGUGaacgaGUCGCUCAUCGUCa -3'
miRNA:   3'- aauugCCACgaaa-UAGCGAGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 189912 0.7 0.980407
Target:  5'- -cGACGGUGgUUgugaaCUCACCGUCg -3'
miRNA:   3'- aaUUGCCACgAAauagcGAGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 213130 0.7 0.980407
Target:  5'- -cGGCGGaGCcgcGUCGCUCGCCGg- -3'
miRNA:   3'- aaUUGCCaCGaaaUAGCGAGUGGCag -5'
29957 3' -49.6 NC_006273.1 + 225788 0.7 0.980407
Target:  5'- ---uCGGUGCUUUcgugauccCGCUCAgCGUCa -3'
miRNA:   3'- aauuGCCACGAAAua------GCGAGUgGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.