miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29957 3' -49.6 NC_006273.1 + 811 0.66 0.998865
Target:  5'- --cGCGGUGUUUUuuuUCGCggaccagCGCCGg- -3'
miRNA:   3'- aauUGCCACGAAAu--AGCGa------GUGGCag -5'
29957 3' -49.6 NC_006273.1 + 3735 0.68 0.996684
Target:  5'- --cAUGGUGUUUUGaCGCuuuaUCACCGUUu -3'
miRNA:   3'- aauUGCCACGAAAUaGCG----AGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 17168 0.66 0.999502
Target:  5'- -cGACGGccgcgccaUGCcg-GUCGUcCGCCGUCg -3'
miRNA:   3'- aaUUGCC--------ACGaaaUAGCGaGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 17758 0.66 0.999502
Target:  5'- -cAGCGc-GCUUUAUcCGaCUCGCUGUCg -3'
miRNA:   3'- aaUUGCcaCGAAAUA-GC-GAGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 28667 1.09 0.015856
Target:  5'- aUUAACGGUGCUUUAUCGCUCACCGUCa -3'
miRNA:   3'- -AAUUGCCACGAAAUAGCGAGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 39042 0.74 0.897786
Target:  5'- -gGAUGGccgGCcUUGUCGCcCACCGUCg -3'
miRNA:   3'- aaUUGCCa--CGaAAUAGCGaGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 40749 0.66 0.998865
Target:  5'- --cGCGGUGUUUUuuuUCGCggaccagCGCCGg- -3'
miRNA:   3'- aauUGCCACGAAAu--AGCGa------GUGGCag -5'
29957 3' -49.6 NC_006273.1 + 45828 0.67 0.998625
Target:  5'- --cAUGGUGUggcUGUgGCUCGgCGUCg -3'
miRNA:   3'- aauUGCCACGaa-AUAgCGAGUgGCAG- -5'
29957 3' -49.6 NC_006273.1 + 58782 0.67 0.997192
Target:  5'- -aAAauGUGCa--AUCGCuUCACCGUCg -3'
miRNA:   3'- aaUUgcCACGaaaUAGCG-AGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 64117 0.69 0.987851
Target:  5'- --cGCGGUGCaacgcgCGCUaGCCGUCu -3'
miRNA:   3'- aauUGCCACGaaaua-GCGAgUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 68125 0.66 0.999068
Target:  5'- cUAGCGaGcgGCUagAUCGCUCGCUG-Cg -3'
miRNA:   3'- aAUUGC-Ca-CGAaaUAGCGAGUGGCaG- -5'
29957 3' -49.6 NC_006273.1 + 70140 0.68 0.994692
Target:  5'- -cAGCGaGUGCggcgAUgGCUCGCCGg- -3'
miRNA:   3'- aaUUGC-CACGaaa-UAgCGAGUGGCag -5'
29957 3' -49.6 NC_006273.1 + 71566 0.67 0.997979
Target:  5'- gUGACGGUGUUUUucguccCGCUuguuggcCACCGUg -3'
miRNA:   3'- aAUUGCCACGAAAua----GCGA-------GUGGCAg -5'
29957 3' -49.6 NC_006273.1 + 88486 0.72 0.958444
Target:  5'- --uACGGUGCaguuccgcaCGCUCAUCGUCa -3'
miRNA:   3'- aauUGCCACGaaaua----GCGAGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 90558 0.66 0.999502
Target:  5'- -cGACGG-GgUUUcgCGUUCACCG-Cg -3'
miRNA:   3'- aaUUGCCaCgAAAuaGCGAGUGGCaG- -5'
29957 3' -49.6 NC_006273.1 + 91901 0.67 0.998343
Target:  5'- -aAACGGUGUUUucUGUC-CU-ACCGUCa -3'
miRNA:   3'- aaUUGCCACGAA--AUAGcGAgUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 92599 0.68 0.993845
Target:  5'- -cGACGGcgGCUgcUGUUGCUCGCCa-- -3'
miRNA:   3'- aaUUGCCa-CGAa-AUAGCGAGUGGcag -5'
29957 3' -49.6 NC_006273.1 + 92747 0.66 0.999502
Target:  5'- -aGGCGGUaGCUcucGUCGCUCA-UGUCc -3'
miRNA:   3'- aaUUGCCA-CGAaa-UAGCGAGUgGCAG- -5'
29957 3' -49.6 NC_006273.1 + 101152 0.72 0.956127
Target:  5'- gUGAUGGUGCg-----GUUCGCCGUCa -3'
miRNA:   3'- aAUUGCCACGaaauagCGAGUGGCAG- -5'
29957 3' -49.6 NC_006273.1 + 102324 0.66 0.999383
Target:  5'- -aAACGGUGauaag-CGCUggccaccaCACCGUCa -3'
miRNA:   3'- aaUUGCCACgaaauaGCGA--------GUGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.