miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29957 5' -62.2 NC_006273.1 + 189016 0.66 0.768166
Target:  5'- uCGGcguCGGgGGCCUG-UGCGacgacaGCCGCg -3'
miRNA:   3'- -GCCu--GCCgCUGGACgACGCg-----UGGCGa -5'
29957 5' -62.2 NC_006273.1 + 40556 0.66 0.768166
Target:  5'- gCGGcuugcuguccACGGCG-CUUuCUGCGCGCUGCc -3'
miRNA:   3'- -GCC----------UGCCGCuGGAcGACGCGUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 202575 0.66 0.768166
Target:  5'- -cGACGGCaGCgUGCUGUGCucgagaucaGCCGUg -3'
miRNA:   3'- gcCUGCCGcUGgACGACGCG---------UGGCGa -5'
29957 5' -62.2 NC_006273.1 + 115427 0.66 0.768166
Target:  5'- aCGGucuCGGUacuGGCCU-UUGCGCuGCCGCUg -3'
miRNA:   3'- -GCCu--GCCG---CUGGAcGACGCG-UGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 76157 0.66 0.768166
Target:  5'- aCGGACGGCuAUCgGUUcGCGCGCuCGUc -3'
miRNA:   3'- -GCCUGCCGcUGGaCGA-CGCGUG-GCGa -5'
29957 5' -62.2 NC_006273.1 + 618 0.66 0.768166
Target:  5'- gCGGcuugcuguccACGGCG-CUUuCUGCGCGCUGCc -3'
miRNA:   3'- -GCC----------UGCCGCuGGAcGACGCGUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 152608 0.66 0.767285
Target:  5'- gCGGGugugucuCGGUGGCCcGCUGCaCgGCCGCg -3'
miRNA:   3'- -GCCU-------GCCGCUGGaCGACGcG-UGGCGa -5'
29957 5' -62.2 NC_006273.1 + 234079 0.66 0.759316
Target:  5'- aGGuuaaauaGGCGAgCUGCgugUGCGUGCCGUc -3'
miRNA:   3'- gCCug-----CCGCUgGACG---ACGCGUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 61277 0.66 0.759316
Target:  5'- gCGGcGCGcGCGGCCgagGCcGUGUACaCGCUu -3'
miRNA:   3'- -GCC-UGC-CGCUGGa--CGaCGCGUG-GCGA- -5'
29957 5' -62.2 NC_006273.1 + 213181 0.66 0.759316
Target:  5'- cCGaGGCGGUGucGCCcaUGCUGCcGCuuacgACCGCUg -3'
miRNA:   3'- -GC-CUGCCGC--UGG--ACGACG-CG-----UGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 69421 0.66 0.750369
Target:  5'- -cGAUGGcCGACCccugGCaugGCgGCGCCGCUg -3'
miRNA:   3'- gcCUGCC-GCUGGa---CGa--CG-CGUGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 65176 0.66 0.750369
Target:  5'- uGGAugUGGCGACCguaccagagGCUGagauCGCCGCg -3'
miRNA:   3'- gCCU--GCCGCUGGa--------CGACgc--GUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 152453 0.66 0.750369
Target:  5'- gCGGAUGuGCuuGCCgcgcaGCUGCGCcuccaGCCGCUc -3'
miRNA:   3'- -GCCUGC-CGc-UGGa----CGACGCG-----UGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 160816 0.66 0.750369
Target:  5'- gCGGAUuggGGCGGCaUGCUGCgGCGauGCUg -3'
miRNA:   3'- -GCCUG---CCGCUGgACGACG-CGUggCGA- -5'
29957 5' -62.2 NC_006273.1 + 56216 0.66 0.750369
Target:  5'- cCGGGCGuuGGCUUGUggauagauuucUGCGUguACCGCUa -3'
miRNA:   3'- -GCCUGCcgCUGGACG-----------ACGCG--UGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 33020 0.66 0.750369
Target:  5'- aGG-UGGCGACCgcGCUG-GCGgCGCa -3'
miRNA:   3'- gCCuGCCGCUGGa-CGACgCGUgGCGa -5'
29957 5' -62.2 NC_006273.1 + 31196 0.66 0.750369
Target:  5'- cCGGcCGGCGuCCagGCUGCcCugguuGCCGCUg -3'
miRNA:   3'- -GCCuGCCGCuGGa-CGACGcG-----UGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 159431 0.66 0.750369
Target:  5'- gCGGGUGGCGccgagGCUUGUUGUaagGCACCGUg -3'
miRNA:   3'- -GCCUGCCGC-----UGGACGACG---CGUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 204584 0.66 0.750369
Target:  5'- uGGugGuCGA-CUGCUGCuacCGCCGCUg -3'
miRNA:   3'- gCCugCcGCUgGACGACGc--GUGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 161382 0.66 0.750369
Target:  5'- uCGGACccgaaaacgagGGCGAguacgagaaUCUGCUGCGCgaGCUGUa -3'
miRNA:   3'- -GCCUG-----------CCGCU---------GGACGACGCG--UGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.