miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29957 5' -62.2 NC_006273.1 + 31368 0.66 0.723014
Target:  5'- --uGCGGCGGCUggacgaagaGCUGCGgCAUCGCg -3'
miRNA:   3'- gccUGCCGCUGGa--------CGACGC-GUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 72345 0.66 0.730377
Target:  5'- uGGugGGCucuacgugaugcGCCUGCUGUccgGCGcCCGCg -3'
miRNA:   3'- gCCugCCGc-----------UGGACGACG---CGU-GGCGa -5'
29957 5' -62.2 NC_006273.1 + 160816 0.66 0.750369
Target:  5'- gCGGAUuggGGCGGCaUGCUGCgGCGauGCUg -3'
miRNA:   3'- -GCCUG---CCGCUGgACGACG-CGUggCGA- -5'
29957 5' -62.2 NC_006273.1 + 33020 0.66 0.750369
Target:  5'- aGG-UGGCGACCgcGCUG-GCGgCGCa -3'
miRNA:   3'- gCCuGCCGCUGGa-CGACgCGUgGCGa -5'
29957 5' -62.2 NC_006273.1 + 188977 0.66 0.732211
Target:  5'- uGGugGGCGGCgUGCUcagguucuuaCGCGgCGCg -3'
miRNA:   3'- gCCugCCGCUGgACGAc---------GCGUgGCGa -5'
29957 5' -62.2 NC_006273.1 + 81032 0.66 0.741331
Target:  5'- -cGACGcGCGAcCCUGCUGC-CGCCa-- -3'
miRNA:   3'- gcCUGC-CGCU-GGACGACGcGUGGcga -5'
29957 5' -62.2 NC_006273.1 + 69421 0.66 0.750369
Target:  5'- -cGAUGGcCGACCccugGCaugGCgGCGCCGCUg -3'
miRNA:   3'- gcCUGCC-GCUGGa---CGa--CG-CGUGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 21292 0.66 0.723014
Target:  5'- cCGGugGuGCGuucgcCCUGUcugcagccggUGCGCgACCGCa -3'
miRNA:   3'- -GCCugC-CGCu----GGACG----------ACGCG-UGGCGa -5'
29957 5' -62.2 NC_006273.1 + 61277 0.66 0.759316
Target:  5'- gCGGcGCGcGCGGCCgagGCcGUGUACaCGCUu -3'
miRNA:   3'- -GCC-UGC-CGCUGGa--CGaCGCGUG-GCGA- -5'
29957 5' -62.2 NC_006273.1 + 118823 0.66 0.732211
Target:  5'- aGuGCGGCGugCUGCacGCuCACCGUUa -3'
miRNA:   3'- gCcUGCCGCugGACGa-CGcGUGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 202575 0.66 0.768166
Target:  5'- -cGACGGCaGCgUGCUGUGCucgagaucaGCCGUg -3'
miRNA:   3'- gcCUGCCGcUGgACGACGCG---------UGGCGa -5'
29957 5' -62.2 NC_006273.1 + 213181 0.66 0.759316
Target:  5'- cCGaGGCGGUGucGCCcaUGCUGCcGCuuacgACCGCUg -3'
miRNA:   3'- -GC-CUGCCGC--UGG--ACGACG-CG-----UGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 210372 0.66 0.723014
Target:  5'- aCGGACGaaaagGACCUGCUGCGaaaagugGCCGg- -3'
miRNA:   3'- -GCCUGCcg---CUGGACGACGCg------UGGCga -5'
29957 5' -62.2 NC_006273.1 + 144444 0.66 0.730377
Target:  5'- gGuGGCGGCGGCUcgcacuacacggGCUcGCGCGCCGg- -3'
miRNA:   3'- gC-CUGCCGCUGGa-----------CGA-CGCGUGGCga -5'
29957 5' -62.2 NC_006273.1 + 65176 0.66 0.750369
Target:  5'- uGGAugUGGCGACCguaccagagGCUGagauCGCCGCg -3'
miRNA:   3'- gCCU--GCCGCUGGa--------CGACgc--GUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 196387 0.66 0.732211
Target:  5'- aGGACGGacuGuACCUggcGCUGgGCGCCGg- -3'
miRNA:   3'- gCCUGCCg--C-UGGA---CGACgCGUGGCga -5'
29957 5' -62.2 NC_006273.1 + 618 0.66 0.768166
Target:  5'- gCGGcuugcuguccACGGCG-CUUuCUGCGCGCUGCc -3'
miRNA:   3'- -GCC----------UGCCGCuGGAcGACGCGUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 152453 0.66 0.750369
Target:  5'- gCGGAUGuGCuuGCCgcgcaGCUGCGCcuccaGCCGCUc -3'
miRNA:   3'- -GCCUGC-CGc-UGGa----CGACGCG-----UGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 152608 0.66 0.767285
Target:  5'- gCGGGugugucuCGGUGGCCcGCUGCaCgGCCGCg -3'
miRNA:   3'- -GCCU-------GCCGCUGGaCGACGcG-UGGCGa -5'
29957 5' -62.2 NC_006273.1 + 133473 0.66 0.741331
Target:  5'- --cACGGCGGCgUGCagGCGCGgaCGCUg -3'
miRNA:   3'- gccUGCCGCUGgACGa-CGCGUg-GCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.