miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29957 5' -62.2 NC_006273.1 + 28704 1.08 0.001582
Target:  5'- aCGGACGGCGACCUGCUGCGCACCGCUa -3'
miRNA:   3'- -GCCUGCCGCUGGACGACGCGUGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 163586 0.79 0.15963
Target:  5'- aCGGGCa-CGGCCUGCUGUGCGCgCGCUg -3'
miRNA:   3'- -GCCUGccGCUGGACGACGCGUG-GCGA- -5'
29957 5' -62.2 NC_006273.1 + 93583 0.78 0.167383
Target:  5'- gCGG-CGGCGGCCUGCgcgGCcuGUACCGCg -3'
miRNA:   3'- -GCCuGCCGCUGGACGa--CG--CGUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 41047 0.78 0.175472
Target:  5'- gGGAUGGCGGgCUGUUGCGUGCCGg- -3'
miRNA:   3'- gCCUGCCGCUgGACGACGCGUGGCga -5'
29957 5' -62.2 NC_006273.1 + 1109 0.78 0.175472
Target:  5'- gGGAUGGCGGgCUGUUGCGUGCCGg- -3'
miRNA:   3'- gCCUGCCGCUgGACGACGCGUGGCga -5'
29957 5' -62.2 NC_006273.1 + 40513 0.78 0.188257
Target:  5'- cCGGACaGGCGACCcgGC-GCGCuACCGCUc -3'
miRNA:   3'- -GCCUG-CCGCUGGa-CGaCGCG-UGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 21209 0.77 0.197231
Target:  5'- uGGGgGGUGGCCgGCUGC-CGCCGCUg -3'
miRNA:   3'- gCCUgCCGCUGGaCGACGcGUGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 175758 0.77 0.197231
Target:  5'- cCGGGCGGCGugUUuuUGCGCAUCGCc -3'
miRNA:   3'- -GCCUGCCGCugGAcgACGCGUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 113134 0.77 0.211389
Target:  5'- -aGGCGGCGGCC-GCagaggGCGCGCCGCUc -3'
miRNA:   3'- gcCUGCCGCUGGaCGa----CGCGUGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 226690 0.76 0.236925
Target:  5'- gGGACGGuCGACguugGCUGCGUACCcGCUa -3'
miRNA:   3'- gCCUGCC-GCUGga--CGACGCGUGG-CGA- -5'
29957 5' -62.2 NC_006273.1 + 59230 0.75 0.270923
Target:  5'- -cGACaaGGCGcaguACCUGCUGgGCGCCGCUg -3'
miRNA:   3'- gcCUG--CCGC----UGGACGACgCGUGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 116618 0.75 0.276957
Target:  5'- uGGACGGCGACg---UGCGUACCGCg -3'
miRNA:   3'- gCCUGCCGCUGgacgACGCGUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 2477 0.74 0.295701
Target:  5'- gGGACGcGCuGcACCUGCacccGCGCGCCGCg -3'
miRNA:   3'- gCCUGC-CG-C-UGGACGa---CGCGUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 197370 0.74 0.295701
Target:  5'- gGGACGcGCuGcACCUGCacccGCGCGCCGCg -3'
miRNA:   3'- gCCUGC-CG-C-UGGACGa---CGCGUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 110385 0.74 0.308737
Target:  5'- -cGACuGcGCGGCCUGCUGCGCAauaugaCGCUg -3'
miRNA:   3'- gcCUG-C-CGCUGGACGACGCGUg-----GCGA- -5'
29957 5' -62.2 NC_006273.1 + 45038 0.73 0.33611
Target:  5'- aCGG-CGGCGGCCUGCU-CGCACgGa- -3'
miRNA:   3'- -GCCuGCCGCUGGACGAcGCGUGgCga -5'
29957 5' -62.2 NC_006273.1 + 14066 0.73 0.343225
Target:  5'- cCGGuaacuauCGGCGGCCgggGCUGUGaACCGCUc -3'
miRNA:   3'- -GCCu------GCCGCUGGa--CGACGCgUGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 75571 0.73 0.372755
Target:  5'- --uGCGGCGACUg--UGCGCGCCGCUg -3'
miRNA:   3'- gccUGCCGCUGGacgACGCGUGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 167436 0.72 0.380403
Target:  5'- uGGACGGCGugUUGCaGgGC-CUGCUg -3'
miRNA:   3'- gCCUGCCGCugGACGaCgCGuGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 76503 0.72 0.380403
Target:  5'- uGGuauUGGcCGACCUGUUGCGCgaaugcacgucGCCGCUc -3'
miRNA:   3'- gCCu--GCC-GCUGGACGACGCG-----------UGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.