miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29957 5' -62.2 NC_006273.1 + 133473 0.66 0.741331
Target:  5'- --cACGGCGGCgUGCagGCGCGgaCGCUg -3'
miRNA:   3'- gccUGCCGCUGgACGa-CGCGUg-GCGA- -5'
29957 5' -62.2 NC_006273.1 + 81040 0.66 0.741331
Target:  5'- aCGGugGcGCucgcucaggcgGAUCUGCUcGUGCAgCCGCUu -3'
miRNA:   3'- -GCCugC-CG-----------CUGGACGA-CGCGU-GGCGA- -5'
29957 5' -62.2 NC_006273.1 + 81032 0.66 0.741331
Target:  5'- -cGACGcGCGAcCCUGCUGC-CGCCa-- -3'
miRNA:   3'- gcCUGC-CGCU-GGACGACGcGUGGcga -5'
29957 5' -62.2 NC_006273.1 + 107390 0.66 0.741331
Target:  5'- aGGAacccaugGGCGG--UGCgGCGCGCCGCa -3'
miRNA:   3'- gCCUg------CCGCUggACGaCGCGUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 233708 0.66 0.732211
Target:  5'- gGGACGGgGuaGCCgagcGCUGCGCcCuCGCc -3'
miRNA:   3'- gCCUGCCgC--UGGa---CGACGCGuG-GCGa -5'
29957 5' -62.2 NC_006273.1 + 182837 0.66 0.732211
Target:  5'- aCGG-CGGCGACgagcucggCUGCUGCaGCACaacgGCc -3'
miRNA:   3'- -GCCuGCCGCUG--------GACGACG-CGUGg---CGa -5'
29957 5' -62.2 NC_006273.1 + 196387 0.66 0.732211
Target:  5'- aGGACGGacuGuACCUggcGCUGgGCGCCGg- -3'
miRNA:   3'- gCCUGCCg--C-UGGA---CGACgCGUGGCga -5'
29957 5' -62.2 NC_006273.1 + 118823 0.66 0.732211
Target:  5'- aGuGCGGCGugCUGCacGCuCACCGUUa -3'
miRNA:   3'- gCcUGCCGCugGACGa-CGcGUGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 188977 0.66 0.732211
Target:  5'- uGGugGGCGGCgUGCUcagguucuuaCGCGgCGCg -3'
miRNA:   3'- gCCugCCGCUGgACGAc---------GCGUgGCGa -5'
29957 5' -62.2 NC_006273.1 + 1494 0.66 0.732211
Target:  5'- aGGACGGacuGuACCUggcGCUGgGCGCCGg- -3'
miRNA:   3'- gCCUGCCg--C-UGGA---CGACgCGUGGCga -5'
29957 5' -62.2 NC_006273.1 + 84635 0.66 0.732211
Target:  5'- cCGG-CGGCuGAUCUGCaGCGCGCU-CUa -3'
miRNA:   3'- -GCCuGCCG-CUGGACGaCGCGUGGcGA- -5'
29957 5' -62.2 NC_006273.1 + 72345 0.66 0.730377
Target:  5'- uGGugGGCucuacgugaugcGCCUGCUGUccgGCGcCCGCg -3'
miRNA:   3'- gCCugCCGc-----------UGGACGACG---CGU-GGCGa -5'
29957 5' -62.2 NC_006273.1 + 144444 0.66 0.730377
Target:  5'- gGuGGCGGCGGCUcgcacuacacggGCUcGCGCGCCGg- -3'
miRNA:   3'- gC-CUGCCGCUGGa-----------CGA-CGCGUGGCga -5'
29957 5' -62.2 NC_006273.1 + 31368 0.66 0.723014
Target:  5'- --uGCGGCGGCUggacgaagaGCUGCGgCAUCGCg -3'
miRNA:   3'- gccUGCCGCUGGa--------CGACGC-GUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 90473 0.66 0.723014
Target:  5'- gCGGuucgGGCGGCUUGagcggGCGCGCgCGCUu -3'
miRNA:   3'- -GCCug--CCGCUGGACga---CGCGUG-GCGA- -5'
29957 5' -62.2 NC_006273.1 + 39600 0.66 0.723014
Target:  5'- gGGcGCGGCGACaUGCcguUGCGCugggccaugGCCGCc -3'
miRNA:   3'- gCC-UGCCGCUGgACG---ACGCG---------UGGCGa -5'
29957 5' -62.2 NC_006273.1 + 21292 0.66 0.723014
Target:  5'- cCGGugGuGCGuucgcCCUGUcugcagccggUGCGCgACCGCa -3'
miRNA:   3'- -GCCugC-CGCu----GGACG----------ACGCG-UGGCGa -5'
29957 5' -62.2 NC_006273.1 + 203534 0.66 0.723014
Target:  5'- uCGGugcaaaugaaGGCGuCCUGCUGaCGCACgaCGCg -3'
miRNA:   3'- -GCCug--------CCGCuGGACGAC-GCGUG--GCGa -5'
29957 5' -62.2 NC_006273.1 + 142756 0.66 0.723014
Target:  5'- uGGAUGuCGGgCCUGauccgcacGCGCGCCGCUg -3'
miRNA:   3'- gCCUGCcGCU-GGACga------CGCGUGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 210372 0.66 0.723014
Target:  5'- aCGGACGaaaagGACCUGCUGCGaaaagugGCCGg- -3'
miRNA:   3'- -GCCUGCcg---CUGGACGACGCg------UGGCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.