miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29957 5' -62.2 NC_006273.1 + 85 0.72 0.420179
Target:  5'- gGcGACGGCGACUaGUUGCGUguGCUGCg -3'
miRNA:   3'- gC-CUGCCGCUGGaCGACGCG--UGGCGa -5'
29957 5' -62.2 NC_006273.1 + 402 0.68 0.638067
Target:  5'- -aGACGcGCG-UCUGCuuuucgccgUGCGCGCCGCa -3'
miRNA:   3'- gcCUGC-CGCuGGACG---------ACGCGUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 618 0.66 0.768166
Target:  5'- gCGGcuugcuguccACGGCG-CUUuCUGCGCGCUGCc -3'
miRNA:   3'- -GCC----------UGCCGCuGGAcGACGCGUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 760 0.7 0.523995
Target:  5'- --uGCGGCGugCUGUguccggcgcuuugUGCGCACUGCc -3'
miRNA:   3'- gccUGCCGCugGACG-------------ACGCGUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 939 0.71 0.46584
Target:  5'- gGGGCGGCGACggcguuguuuucgggCgUGCUGgGCGCCGg- -3'
miRNA:   3'- gCCUGCCGCUG---------------G-ACGACgCGUGGCga -5'
29957 5' -62.2 NC_006273.1 + 1109 0.78 0.175472
Target:  5'- gGGAUGGCGGgCUGUUGCGUGCCGg- -3'
miRNA:   3'- gCCUGCCGCUgGACGACGCGUGGCga -5'
29957 5' -62.2 NC_006273.1 + 1210 0.72 0.412023
Target:  5'- gGGAUGGCGAgCUGUUGCGUGgCGg- -3'
miRNA:   3'- gCCUGCCGCUgGACGACGCGUgGCga -5'
29957 5' -62.2 NC_006273.1 + 1494 0.66 0.732211
Target:  5'- aGGACGGacuGuACCUggcGCUGgGCGCCGg- -3'
miRNA:   3'- gCCUGCCg--C-UGGA---CGACgCGUGGCga -5'
29957 5' -62.2 NC_006273.1 + 2239 0.69 0.562071
Target:  5'- gCGGcguCGGgGACCgUGCcGCGCGCCauGCUg -3'
miRNA:   3'- -GCCu--GCCgCUGG-ACGaCGCGUGG--CGA- -5'
29957 5' -62.2 NC_006273.1 + 2273 0.68 0.638067
Target:  5'- uGGugGuGCugGACgaGCUGgGCGCCGUg -3'
miRNA:   3'- gCCugC-CG--CUGgaCGACgCGUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 2477 0.74 0.295701
Target:  5'- gGGACGcGCuGcACCUGCacccGCGCGCCGCg -3'
miRNA:   3'- gCCUGC-CG-C-UGGACGa---CGCGUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 7695 0.67 0.704425
Target:  5'- uGGGCGGCGGCg-GCaGUG-GCCGCg -3'
miRNA:   3'- gCCUGCCGCUGgaCGaCGCgUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 13588 0.67 0.676161
Target:  5'- cCGGGCGGCccgGGCCgccgUGCUGgaGgGCCGCc -3'
miRNA:   3'- -GCCUGCCG---CUGG----ACGACg-CgUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 14066 0.73 0.343225
Target:  5'- cCGGuaacuauCGGCGGCCgggGCUGUGaACCGCUc -3'
miRNA:   3'- -GCCu------GCCGCUGGa--CGACGCgUGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 15671 0.67 0.676161
Target:  5'- gGGGCGuuGCGAUgCUGCUGUuuGCCGCc -3'
miRNA:   3'- gCCUGC--CGCUG-GACGACGcgUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 21209 0.77 0.197231
Target:  5'- uGGGgGGUGGCCgGCUGC-CGCCGCUg -3'
miRNA:   3'- gCCUgCCGCUGGaCGACGcGUGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 21292 0.66 0.723014
Target:  5'- cCGGugGuGCGuucgcCCUGUcugcagccggUGCGCgACCGCa -3'
miRNA:   3'- -GCCugC-CGCu----GGACG----------ACGCG-UGGCGa -5'
29957 5' -62.2 NC_006273.1 + 21554 0.7 0.534122
Target:  5'- aGGACGGCGGC--GCgGCGCAgCgGCUg -3'
miRNA:   3'- gCCUGCCGCUGgaCGaCGCGU-GgCGA- -5'
29957 5' -62.2 NC_006273.1 + 21847 0.67 0.666667
Target:  5'- --uACGGCGcugggacuuuGgCUGCUGCGgGCCGCg -3'
miRNA:   3'- gccUGCCGC----------UgGACGACGCgUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 28704 1.08 0.001582
Target:  5'- aCGGACGGCGACCUGCUGCGCACCGCUa -3'
miRNA:   3'- -GCCUGCCGCUGGACGACGCGUGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.