miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29957 5' -62.2 NC_006273.1 + 189115 0.71 0.479859
Target:  5'- aGGAUGGCGGCg-GCUGaugcaGUACCGUg -3'
miRNA:   3'- gCCUGCCGCUGgaCGACg----CGUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 38177 0.72 0.420179
Target:  5'- uCGGACGGCGggacGCCgaGCc-CGCGCCGCg -3'
miRNA:   3'- -GCCUGCCGC----UGGa-CGacGCGUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 218200 0.72 0.423468
Target:  5'- uGGGCGGCGGCCgacgGCggacgaccggcaugGCGCgGCCGUc -3'
miRNA:   3'- gCCUGCCGCUGGa---CGa-------------CGCG-UGGCGa -5'
29957 5' -62.2 NC_006273.1 + 105654 0.71 0.445219
Target:  5'- aCGG-CGGCGGCCuUGCUGUcCuCCGCg -3'
miRNA:   3'- -GCCuGCCGCUGG-ACGACGcGuGGCGa -5'
29957 5' -62.2 NC_006273.1 + 149674 0.71 0.445219
Target:  5'- gCGGcguuaGGUGGCUguUGCUGCGCGCCGgUg -3'
miRNA:   3'- -GCCug---CCGCUGG--ACGACGCGUGGCgA- -5'
29957 5' -62.2 NC_006273.1 + 148831 0.71 0.45375
Target:  5'- cCGGcCGGCGGCgaucgucgcuggCUGUUGC-CGCCGCUg -3'
miRNA:   3'- -GCCuGCCGCUG------------GACGACGcGUGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 73746 0.71 0.462368
Target:  5'- gCGG-CGGCGGCCgaggcccgGCaGCgGCGCCGCc -3'
miRNA:   3'- -GCCuGCCGCUGGa-------CGaCG-CGUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 939 0.71 0.46584
Target:  5'- gGGGCGGCGACggcguuguuuucgggCgUGCUGgGCGCCGg- -3'
miRNA:   3'- gCCUGCCGCUG---------------G-ACGACgCGUGGCga -5'
29957 5' -62.2 NC_006273.1 + 215928 0.71 0.479859
Target:  5'- gGGAUGGgGACCUGUUucaGCGUguguCCGCg -3'
miRNA:   3'- gCCUGCCgCUGGACGA---CGCGu---GGCGa -5'
29957 5' -62.2 NC_006273.1 + 234916 0.72 0.420179
Target:  5'- gGcGACGGCGACUaGUUGCGUguGCUGCg -3'
miRNA:   3'- gC-CUGCCGCUGGaCGACGCG--UGGCGa -5'
29957 5' -62.2 NC_006273.1 + 85 0.72 0.420179
Target:  5'- gGcGACGGCGACUaGUUGCGUguGCUGCg -3'
miRNA:   3'- gC-CUGCCGCUGGaCGACGCG--UGGCGa -5'
29957 5' -62.2 NC_006273.1 + 66831 0.72 0.420179
Target:  5'- uGGAagcgcuaGGCGGCCUGCagcuacccgaagUGCGCAgCGCc -3'
miRNA:   3'- gCCUg------CCGCUGGACG------------ACGCGUgGCGa -5'
29957 5' -62.2 NC_006273.1 + 40513 0.78 0.188257
Target:  5'- cCGGACaGGCGACCcgGC-GCGCuACCGCUc -3'
miRNA:   3'- -GCCUG-CCGCUGGa-CGaCGCG-UGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 21209 0.77 0.197231
Target:  5'- uGGGgGGUGGCCgGCUGC-CGCCGCUg -3'
miRNA:   3'- gCCUgCCGCUGGaCGACGcGUGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 226690 0.76 0.236925
Target:  5'- gGGACGGuCGACguugGCUGCGUACCcGCUa -3'
miRNA:   3'- gCCUGCC-GCUGga--CGACGCGUGG-CGA- -5'
29957 5' -62.2 NC_006273.1 + 197370 0.74 0.295701
Target:  5'- gGGACGcGCuGcACCUGCacccGCGCGCCGCg -3'
miRNA:   3'- gCCUGC-CG-C-UGGACGa---CGCGUGGCGa -5'
29957 5' -62.2 NC_006273.1 + 45038 0.73 0.33611
Target:  5'- aCGG-CGGCGGCCUGCU-CGCACgGa- -3'
miRNA:   3'- -GCCuGCCGCUGGACGAcGCGUGgCga -5'
29957 5' -62.2 NC_006273.1 + 75571 0.73 0.372755
Target:  5'- --uGCGGCGACUg--UGCGCGCCGCUg -3'
miRNA:   3'- gccUGCCGCUGGacgACGCGUGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 76503 0.72 0.380403
Target:  5'- uGGuauUGGcCGACCUGUUGCGCgaaugcacgucGCCGCUc -3'
miRNA:   3'- gCCu--GCC-GCUGGACGACGCG-----------UGGCGA- -5'
29957 5' -62.2 NC_006273.1 + 1210 0.72 0.412023
Target:  5'- gGGAUGGCGAgCUGUUGCGUGgCGg- -3'
miRNA:   3'- gCCUGCCGCUgGACGACGCGUgGCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.