miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29958 3' -51.1 NC_006273.1 + 95077 0.66 0.998033
Target:  5'- --gUCC-GCCUUAUCCUgGGCGUuGGCc -3'
miRNA:   3'- caaAGGuCGGAGUAGGA-UUGCAcCUG- -5'
29958 3' -51.1 NC_006273.1 + 101386 0.66 0.997661
Target:  5'- ---gCCuGCCUCAUCCgacagAGCGUGcagaGCa -3'
miRNA:   3'- caaaGGuCGGAGUAGGa----UUGCACc---UG- -5'
29958 3' -51.1 NC_006273.1 + 176921 0.66 0.997579
Target:  5'- --cUCCAGCUUCAUCacacacaucugaUAACGUGuGCc -3'
miRNA:   3'- caaAGGUCGGAGUAGg-----------AUUGCACcUG- -5'
29958 3' -51.1 NC_006273.1 + 163338 0.66 0.997231
Target:  5'- gGUUUCCAGCagaCUCuugCCagaGACGUcGGGCg -3'
miRNA:   3'- -CAAAGGUCG---GAGua-GGa--UUGCA-CCUG- -5'
29958 3' -51.1 NC_006273.1 + 182408 0.67 0.994807
Target:  5'- --cUCCAGUCUacgugaAUCUguuaggUAGCGUGGGCc -3'
miRNA:   3'- caaAGGUCGGAg-----UAGG------AUUGCACCUG- -5'
29958 3' -51.1 NC_006273.1 + 228305 0.67 0.994807
Target:  5'- --aUCCGGCCUCAauaUCaucugGUGGACc -3'
miRNA:   3'- caaAGGUCGGAGU---AGgauugCACCUG- -5'
29958 3' -51.1 NC_006273.1 + 118934 0.67 0.994651
Target:  5'- --aUUCGGCCUCGUCCggagacugguCGUagcGGGCg -3'
miRNA:   3'- caaAGGUCGGAGUAGGauu-------GCA---CCUG- -5'
29958 3' -51.1 NC_006273.1 + 184558 0.68 0.990893
Target:  5'- gGUUUCCAGCa--AUCCUcGGCGUcGGCg -3'
miRNA:   3'- -CAAAGGUCGgagUAGGA-UUGCAcCUG- -5'
29958 3' -51.1 NC_006273.1 + 186051 0.68 0.990893
Target:  5'- -cUUUCAGCgUCGUCC--GCGcGGGCg -3'
miRNA:   3'- caAAGGUCGgAGUAGGauUGCaCCUG- -5'
29958 3' -51.1 NC_006273.1 + 122976 0.68 0.989621
Target:  5'- --cUCCAGucCCUCGUCCgccgcgccggAGCGUGG-Cg -3'
miRNA:   3'- caaAGGUC--GGAGUAGGa---------UUGCACCuG- -5'
29958 3' -51.1 NC_006273.1 + 141395 0.68 0.989621
Target:  5'- ----aCAGCUgcaAUCCggUAACGUGGACg -3'
miRNA:   3'- caaagGUCGGag-UAGG--AUUGCACCUG- -5'
29958 3' -51.1 NC_006273.1 + 84803 0.68 0.988213
Target:  5'- --gUUUAGCCUCAagCUGAccgagcguaagcCGUGGACg -3'
miRNA:   3'- caaAGGUCGGAGUagGAUU------------GCACCUG- -5'
29958 3' -51.1 NC_006273.1 + 14698 0.68 0.986663
Target:  5'- ---aCCGGCUUCGUCCUGuua-GGACu -3'
miRNA:   3'- caaaGGUCGGAGUAGGAUugcaCCUG- -5'
29958 3' -51.1 NC_006273.1 + 22863 0.68 0.98496
Target:  5'- ---gUUGGCCUCGauccaUCCUGgggaaACGUGGACg -3'
miRNA:   3'- caaaGGUCGGAGU-----AGGAU-----UGCACCUG- -5'
29958 3' -51.1 NC_006273.1 + 65253 0.69 0.976456
Target:  5'- ---aCCGGCgUCGUCCgagaaAGCGcGGACa -3'
miRNA:   3'- caaaGGUCGgAGUAGGa----UUGCaCCUG- -5'
29958 3' -51.1 NC_006273.1 + 164658 0.69 0.976456
Target:  5'- ---aCCAGCCgacugUGUCCUGuucgaACGUGGAg -3'
miRNA:   3'- caaaGGUCGGa----GUAGGAU-----UGCACCUg -5'
29958 3' -51.1 NC_006273.1 + 117455 0.7 0.971076
Target:  5'- cGUcgCCGGCUgugUCGUCuCUAGCGUGGcCu -3'
miRNA:   3'- -CAaaGGUCGG---AGUAG-GAUUGCACCuG- -5'
29958 3' -51.1 NC_006273.1 + 81400 0.7 0.961434
Target:  5'- --cUCCAgcGCCUCggUCU-GCGUGGGCg -3'
miRNA:   3'- caaAGGU--CGGAGuaGGAuUGCACCUG- -5'
29958 3' -51.1 NC_006273.1 + 34000 0.7 0.961434
Target:  5'- --cUCCAGCCUCAgcucggcgugcUCCaAACGggaauggugGGACg -3'
miRNA:   3'- caaAGGUCGGAGU-----------AGGaUUGCa--------CCUG- -5'
29958 3' -51.1 NC_006273.1 + 24277 0.72 0.925528
Target:  5'- gGUUaCCGGUCacagagCGUgCUGACGUGGACg -3'
miRNA:   3'- -CAAaGGUCGGa-----GUAgGAUUGCACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.