miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29958 5' -59.6 NC_006273.1 + 14007 0.66 0.819962
Target:  5'- gGGCggGC-GCGGgGUGGCggagcgGGGAGc -3'
miRNA:   3'- aCCGgaCGuUGCCgCACCGaa----CCCUU- -5'
29958 5' -59.6 NC_006273.1 + 34655 0.66 0.819962
Target:  5'- cGGCgaaUGUAcaccAUGGCGU-GCUUGGGAu -3'
miRNA:   3'- aCCGg--ACGU----UGCCGCAcCGAACCCUu -5'
29958 5' -59.6 NC_006273.1 + 89437 0.66 0.819962
Target:  5'- aGGCCaGCAGCGGCuGgaaggccacGGCguaGGGAu -3'
miRNA:   3'- aCCGGaCGUUGCCG-Ca--------CCGaa-CCCUu -5'
29958 5' -59.6 NC_006273.1 + 208811 0.66 0.812404
Target:  5'- gGGCCcagGCGAUGGCGgaggagacGGCgggaauucuauuaagUGGGGAg -3'
miRNA:   3'- aCCGGa--CGUUGCCGCa-------CCGa--------------ACCCUU- -5'
29958 5' -59.6 NC_006273.1 + 173554 0.66 0.811557
Target:  5'- -cGUCUGUAccgUGGCGUGGCUUaGGAGg -3'
miRNA:   3'- acCGGACGUu--GCCGCACCGAAcCCUU- -5'
29958 5' -59.6 NC_006273.1 + 54938 0.66 0.811557
Target:  5'- gUGGgCUGCAgucggguggugGCGGCgGUGGCgu-GGAAa -3'
miRNA:   3'- -ACCgGACGU-----------UGCCG-CACCGaacCCUU- -5'
29958 5' -59.6 NC_006273.1 + 198271 0.66 0.794296
Target:  5'- gGGCCUGCGgcguuacuuGCGGCGcuucgagGGCUcgugcgugucgcUGGGc- -3'
miRNA:   3'- aCCGGACGU---------UGCCGCa------CCGA------------ACCCuu -5'
29958 5' -59.6 NC_006273.1 + 145737 0.66 0.785455
Target:  5'- cGGCaacagaagCUGCGgcucuGCGGUaGUGGCUgcggGGGAAa -3'
miRNA:   3'- aCCG--------GACGU-----UGCCG-CACCGAa---CCCUU- -5'
29958 5' -59.6 NC_006273.1 + 189836 0.67 0.767394
Target:  5'- cGGCCacgccgggugGCAucuGCGGCaUGGCggGGGGAg -3'
miRNA:   3'- aCCGGa---------CGU---UGCCGcACCGaaCCCUU- -5'
29958 5' -59.6 NC_006273.1 + 76261 0.67 0.72998
Target:  5'- gGGCCgucaCAACGGCGgUGGCaccagcgGGGGGu -3'
miRNA:   3'- aCCGGac--GUUGCCGC-ACCGaa-----CCCUU- -5'
29958 5' -59.6 NC_006273.1 + 7696 0.67 0.72998
Target:  5'- gGGCg-GCGGCGGCaGUGGCcgcggcagcgGGGAGg -3'
miRNA:   3'- aCCGgaCGUUGCCG-CACCGaa--------CCCUU- -5'
29958 5' -59.6 NC_006273.1 + 16887 0.67 0.72998
Target:  5'- cGGUCUGCGGCGcGCGgccaGGCU--GGAAc -3'
miRNA:   3'- aCCGGACGUUGC-CGCa---CCGAacCCUU- -5'
29958 5' -59.6 NC_006273.1 + 189026 0.68 0.720406
Target:  5'- gGGCCugUGCGACGacagccGCGUGGUggGGGc- -3'
miRNA:   3'- aCCGG--ACGUUGC------CGCACCGaaCCCuu -5'
29958 5' -59.6 NC_006273.1 + 69699 0.68 0.706886
Target:  5'- cGGCCgccgaucgcguagGCAGCGGCGaaggUGGUgacguagGGGAAc -3'
miRNA:   3'- aCCGGa------------CGUUGCCGC----ACCGaa-----CCCUU- -5'
29958 5' -59.6 NC_006273.1 + 157381 0.68 0.681485
Target:  5'- -cGCCUGCGACGGCG-GGU---GGAGa -3'
miRNA:   3'- acCGGACGUUGCCGCaCCGaacCCUU- -5'
29958 5' -59.6 NC_006273.1 + 126850 0.68 0.681485
Target:  5'- aGGCCUGCAgcaGCGGCGUauGuGCgucggUGGcGAc -3'
miRNA:   3'- aCCGGACGU---UGCCGCA--C-CGa----ACC-CUu -5'
29958 5' -59.6 NC_006273.1 + 163079 0.69 0.64195
Target:  5'- cGGCg-GCGACGGCGgcGGCUgcgGGGu- -3'
miRNA:   3'- aCCGgaCGUUGCCGCa-CCGAa--CCCuu -5'
29958 5' -59.6 NC_006273.1 + 188912 0.69 0.622108
Target:  5'- gGGCCUGggcgucacCGGCGGUGUccagccgaccGGCUUGGGu- -3'
miRNA:   3'- aCCGGAC--------GUUGCCGCA----------CCGAACCCuu -5'
29958 5' -59.6 NC_006273.1 + 4581 0.7 0.602294
Target:  5'- gUGGCgacgGCAGCGGUgGUGGCgcUGGGGGu -3'
miRNA:   3'- -ACCGga--CGUUGCCG-CACCGa-ACCCUU- -5'
29958 5' -59.6 NC_006273.1 + 95259 0.7 0.582564
Target:  5'- cUGGCCgaUGCGGCGGCGaGG-UUGGGu- -3'
miRNA:   3'- -ACCGG--ACGUUGCCGCaCCgAACCCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.