miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29959 5' -51.7 NC_006273.1 + 152369 0.66 0.997322
Target:  5'- aAUCUCCUCgugcaGGUGUgccacCGGcgugguGAACAGCa -3'
miRNA:   3'- -UAGAGGAGgg---CCAUAa----GCC------UUUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 130081 0.66 0.996847
Target:  5'- gGUCgaaCCUCauaaCGGUGggacaGGAGACGGUg -3'
miRNA:   3'- -UAGa--GGAGg---GCCAUaag--CCUUUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 225147 0.66 0.996847
Target:  5'- cUCagUCUCUCGGUGcgUGGAccaGACGGCg -3'
miRNA:   3'- uAGa-GGAGGGCCAUaaGCCU---UUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 60716 0.66 0.996847
Target:  5'- uGUCUCCUCCCcGUAUgCuGu--CAGCg -3'
miRNA:   3'- -UAGAGGAGGGcCAUAaGcCuuuGUCG- -5'
29959 5' -51.7 NC_006273.1 + 188031 0.66 0.996305
Target:  5'- --aUCgUCgCCGGU-UUCGGGcgauGACAGCg -3'
miRNA:   3'- uagAGgAG-GGCCAuAAGCCU----UUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 56003 0.66 0.995689
Target:  5'- --gUCCUUgCGGgcgUCGGAggugacagAGCAGCg -3'
miRNA:   3'- uagAGGAGgGCCauaAGCCU--------UUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 53398 0.66 0.995689
Target:  5'- -cCUCCUCCCuGGUAccCGauAACAGUg -3'
miRNA:   3'- uaGAGGAGGG-CCAUaaGCcuUUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 60596 0.66 0.994992
Target:  5'- gAUCcagCCUCCgCGGc---CGGGAACGGUg -3'
miRNA:   3'- -UAGa--GGAGG-GCCauaaGCCUUUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 215905 0.66 0.994992
Target:  5'- cGUCUCCcaUCUGGUcggGUUCGGGGAUGGg -3'
miRNA:   3'- -UAGAGGa-GGGCCA---UAAGCCUUUGUCg -5'
29959 5' -51.7 NC_006273.1 + 93713 0.66 0.994992
Target:  5'- uUCUCCU-CCGGaac-CGGggGgGGCa -3'
miRNA:   3'- uAGAGGAgGGCCauaaGCCuuUgUCG- -5'
29959 5' -51.7 NC_006273.1 + 220904 0.67 0.994206
Target:  5'- cUCUCCgCCuCGGUGaugUCGu-AACAGCa -3'
miRNA:   3'- uAGAGGaGG-GCCAUa--AGCcuUUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 7608 0.67 0.994206
Target:  5'- cAUCUCCUCCUGGaGgcCGGcGAcguuaacugcuACAGCu -3'
miRNA:   3'- -UAGAGGAGGGCCaUaaGCC-UU-----------UGUCG- -5'
29959 5' -51.7 NC_006273.1 + 52752 0.67 0.994206
Target:  5'- cUCUCCUcCCCGGcc-UCGGccAAgAGCg -3'
miRNA:   3'- uAGAGGA-GGGCCauaAGCCu-UUgUCG- -5'
29959 5' -51.7 NC_006273.1 + 97739 0.67 0.992336
Target:  5'- cAUCUCgacgCCCGGgugaCGGAcGACGGCa -3'
miRNA:   3'- -UAGAGga--GGGCCauaaGCCU-UUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 193018 0.67 0.992336
Target:  5'- aAUCUCCUCUCGc---UCGGcgGCGGUu -3'
miRNA:   3'- -UAGAGGAGGGCcauaAGCCuuUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 104049 0.67 0.991235
Target:  5'- -aCUCCUCCaCGGU----GGAGAUGGUg -3'
miRNA:   3'- uaGAGGAGG-GCCAuaagCCUUUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 99494 0.67 0.991235
Target:  5'- cGUCUUCUUgCGGUAccggUGGugGCGGCg -3'
miRNA:   3'- -UAGAGGAGgGCCAUaa--GCCuuUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 213155 0.68 0.981802
Target:  5'- cGUCggcgaCUCauGGUGUUCGGAAACcgaGGCg -3'
miRNA:   3'- -UAGag---GAGggCCAUAAGCCUUUG---UCG- -5'
29959 5' -51.7 NC_006273.1 + 179268 0.69 0.979679
Target:  5'- cAUCUCCUCCaGGUAgUgGGucuGACuGCg -3'
miRNA:   3'- -UAGAGGAGGgCCAUaAgCCu--UUGuCG- -5'
29959 5' -51.7 NC_006273.1 + 102799 0.69 0.979679
Target:  5'- -gCUCgUCCCGGUAaUC-GAGAUAGUc -3'
miRNA:   3'- uaGAGgAGGGCCAUaAGcCUUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.