miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29959 5' -51.7 NC_006273.1 + 26263 1.11 0.008114
Target:  5'- gAUCUCCUCCCGGUAUUCGGAAACAGCg -3'
miRNA:   3'- -UAGAGGAGGGCCAUAAGCCUUUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 42037 0.77 0.670174
Target:  5'- -cCUCCgggaggcgCCCGGUuuacgugUCGGggGCGGCg -3'
miRNA:   3'- uaGAGGa-------GGGCCAua-----AGCCuuUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 115074 0.75 0.805956
Target:  5'- cAUCgUCCUcgCCCGGUGagggacccucgUCGGAAGCGGCc -3'
miRNA:   3'- -UAG-AGGA--GGGCCAUa----------AGCCUUUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 228702 0.73 0.863792
Target:  5'- uUgUCUgaaCCCGGguggguUGUUCGGAAACGGCg -3'
miRNA:   3'- uAgAGGa--GGGCC------AUAAGCCUUUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 162341 0.73 0.871267
Target:  5'- aAUCgUCCUCgucugCCGGUGguggUGGAGGCGGCg -3'
miRNA:   3'- -UAG-AGGAG-----GGCCAUaa--GCCUUUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 80366 0.72 0.911421
Target:  5'- cUCUCC-CCCGcuccaagCGGGAGCGGCg -3'
miRNA:   3'- uAGAGGaGGGCcauaa--GCCUUUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 197289 0.71 0.938392
Target:  5'- aAUCUCUUCCCGGgcccugcGUUCa-AGACGGCg -3'
miRNA:   3'- -UAGAGGAGGGCCa------UAAGccUUUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 4843 0.71 0.943067
Target:  5'- cGUCUUCUCCCGGcca-CGG--GCGGCu -3'
miRNA:   3'- -UAGAGGAGGGCCauaaGCCuuUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 105180 0.71 0.943067
Target:  5'- -cCUCg-CCCaGGUAgcCGGAGACGGCg -3'
miRNA:   3'- uaGAGgaGGG-CCAUaaGCCUUUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 189388 0.7 0.966241
Target:  5'- cGUCUUCUUUCGGaAUUCGauAGCAGCa -3'
miRNA:   3'- -UAGAGGAGGGCCaUAAGCcuUUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 212078 0.69 0.974891
Target:  5'- ---gCCgUCCCGGUggccucugaGUUCGGAgacauGACGGCg -3'
miRNA:   3'- uagaGG-AGGGCCA---------UAAGCCU-----UUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 134078 0.69 0.977378
Target:  5'- -cCUCCUCCCGccacgcacUCGGggGCAccgGCg -3'
miRNA:   3'- uaGAGGAGGGCcaua----AGCCuuUGU---CG- -5'
29959 5' -51.7 NC_006273.1 + 213306 0.69 0.978321
Target:  5'- uUUUCCUCuucgguguucagacgCCGGUAcgaUUCGGAAcaccaguagcACAGCa -3'
miRNA:   3'- uAGAGGAG---------------GGCCAU---AAGCCUU----------UGUCG- -5'
29959 5' -51.7 NC_006273.1 + 102799 0.69 0.979679
Target:  5'- -gCUCgUCCCGGUAaUC-GAGAUAGUc -3'
miRNA:   3'- uaGAGgAGGGCCAUaAGcCUUUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 179268 0.69 0.979679
Target:  5'- cAUCUCCUCCaGGUAgUgGGucuGACuGCg -3'
miRNA:   3'- -UAGAGGAGGgCCAUaAgCCu--UUGuCG- -5'
29959 5' -51.7 NC_006273.1 + 213155 0.68 0.981802
Target:  5'- cGUCggcgaCUCauGGUGUUCGGAAACcgaGGCg -3'
miRNA:   3'- -UAGag---GAGggCCAUAAGCCUUUG---UCG- -5'
29959 5' -51.7 NC_006273.1 + 104049 0.67 0.991235
Target:  5'- -aCUCCUCCaCGGU----GGAGAUGGUg -3'
miRNA:   3'- uaGAGGAGG-GCCAuaagCCUUUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 99494 0.67 0.991235
Target:  5'- cGUCUUCUUgCGGUAccggUGGugGCGGCg -3'
miRNA:   3'- -UAGAGGAGgGCCAUaa--GCCuuUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 193018 0.67 0.992336
Target:  5'- aAUCUCCUCUCGc---UCGGcgGCGGUu -3'
miRNA:   3'- -UAGAGGAGGGCcauaAGCCuuUGUCG- -5'
29959 5' -51.7 NC_006273.1 + 97739 0.67 0.992336
Target:  5'- cAUCUCgacgCCCGGgugaCGGAcGACGGCa -3'
miRNA:   3'- -UAGAGga--GGGCCauaaGCCU-UUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.