Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29959 | 5' | -51.7 | NC_006273.1 | + | 4843 | 0.71 | 0.943067 |
Target: 5'- cGUCUUCUCCCGGcca-CGG--GCGGCu -3' miRNA: 3'- -UAGAGGAGGGCCauaaGCCuuUGUCG- -5' |
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29959 | 5' | -51.7 | NC_006273.1 | + | 7608 | 0.67 | 0.994206 |
Target: 5'- cAUCUCCUCCUGGaGgcCGGcGAcguuaacugcuACAGCu -3' miRNA: 3'- -UAGAGGAGGGCCaUaaGCC-UU-----------UGUCG- -5' |
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29959 | 5' | -51.7 | NC_006273.1 | + | 26263 | 1.11 | 0.008114 |
Target: 5'- gAUCUCCUCCCGGUAUUCGGAAACAGCg -3' miRNA: 3'- -UAGAGGAGGGCCAUAAGCCUUUGUCG- -5' |
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29959 | 5' | -51.7 | NC_006273.1 | + | 42037 | 0.77 | 0.670174 |
Target: 5'- -cCUCCgggaggcgCCCGGUuuacgugUCGGggGCGGCg -3' miRNA: 3'- uaGAGGa-------GGGCCAua-----AGCCuuUGUCG- -5' |
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29959 | 5' | -51.7 | NC_006273.1 | + | 52752 | 0.67 | 0.994206 |
Target: 5'- cUCUCCUcCCCGGcc-UCGGccAAgAGCg -3' miRNA: 3'- uAGAGGA-GGGCCauaAGCCu-UUgUCG- -5' |
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29959 | 5' | -51.7 | NC_006273.1 | + | 53398 | 0.66 | 0.995689 |
Target: 5'- -cCUCCUCCCuGGUAccCGauAACAGUg -3' miRNA: 3'- uaGAGGAGGG-CCAUaaGCcuUUGUCG- -5' |
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29959 | 5' | -51.7 | NC_006273.1 | + | 56003 | 0.66 | 0.995689 |
Target: 5'- --gUCCUUgCGGgcgUCGGAggugacagAGCAGCg -3' miRNA: 3'- uagAGGAGgGCCauaAGCCU--------UUGUCG- -5' |
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29959 | 5' | -51.7 | NC_006273.1 | + | 60596 | 0.66 | 0.994992 |
Target: 5'- gAUCcagCCUCCgCGGc---CGGGAACGGUg -3' miRNA: 3'- -UAGa--GGAGG-GCCauaaGCCUUUGUCG- -5' |
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29959 | 5' | -51.7 | NC_006273.1 | + | 60716 | 0.66 | 0.996847 |
Target: 5'- uGUCUCCUCCCcGUAUgCuGu--CAGCg -3' miRNA: 3'- -UAGAGGAGGGcCAUAaGcCuuuGUCG- -5' |
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29959 | 5' | -51.7 | NC_006273.1 | + | 80366 | 0.72 | 0.911421 |
Target: 5'- cUCUCC-CCCGcuccaagCGGGAGCGGCg -3' miRNA: 3'- uAGAGGaGGGCcauaa--GCCUUUGUCG- -5' |
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29959 | 5' | -51.7 | NC_006273.1 | + | 93713 | 0.66 | 0.994992 |
Target: 5'- uUCUCCU-CCGGaac-CGGggGgGGCa -3' miRNA: 3'- uAGAGGAgGGCCauaaGCCuuUgUCG- -5' |
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29959 | 5' | -51.7 | NC_006273.1 | + | 97739 | 0.67 | 0.992336 |
Target: 5'- cAUCUCgacgCCCGGgugaCGGAcGACGGCa -3' miRNA: 3'- -UAGAGga--GGGCCauaaGCCU-UUGUCG- -5' |
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29959 | 5' | -51.7 | NC_006273.1 | + | 99494 | 0.67 | 0.991235 |
Target: 5'- cGUCUUCUUgCGGUAccggUGGugGCGGCg -3' miRNA: 3'- -UAGAGGAGgGCCAUaa--GCCuuUGUCG- -5' |
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29959 | 5' | -51.7 | NC_006273.1 | + | 102799 | 0.69 | 0.979679 |
Target: 5'- -gCUCgUCCCGGUAaUC-GAGAUAGUc -3' miRNA: 3'- uaGAGgAGGGCCAUaAGcCUUUGUCG- -5' |
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29959 | 5' | -51.7 | NC_006273.1 | + | 104049 | 0.67 | 0.991235 |
Target: 5'- -aCUCCUCCaCGGU----GGAGAUGGUg -3' miRNA: 3'- uaGAGGAGG-GCCAuaagCCUUUGUCG- -5' |
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29959 | 5' | -51.7 | NC_006273.1 | + | 105180 | 0.71 | 0.943067 |
Target: 5'- -cCUCg-CCCaGGUAgcCGGAGACGGCg -3' miRNA: 3'- uaGAGgaGGG-CCAUaaGCCUUUGUCG- -5' |
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29959 | 5' | -51.7 | NC_006273.1 | + | 115074 | 0.75 | 0.805956 |
Target: 5'- cAUCgUCCUcgCCCGGUGagggacccucgUCGGAAGCGGCc -3' miRNA: 3'- -UAG-AGGA--GGGCCAUa----------AGCCUUUGUCG- -5' |
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29959 | 5' | -51.7 | NC_006273.1 | + | 130081 | 0.66 | 0.996847 |
Target: 5'- gGUCgaaCCUCauaaCGGUGggacaGGAGACGGUg -3' miRNA: 3'- -UAGa--GGAGg---GCCAUaag--CCUUUGUCG- -5' |
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29959 | 5' | -51.7 | NC_006273.1 | + | 134078 | 0.69 | 0.977378 |
Target: 5'- -cCUCCUCCCGccacgcacUCGGggGCAccgGCg -3' miRNA: 3'- uaGAGGAGGGCcaua----AGCCuuUGU---CG- -5' |
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29959 | 5' | -51.7 | NC_006273.1 | + | 152369 | 0.66 | 0.997322 |
Target: 5'- aAUCUCCUCgugcaGGUGUgccacCGGcgugguGAACAGCa -3' miRNA: 3'- -UAGAGGAGgg---CCAUAa----GCC------UUUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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