miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29960 5' -53.1 NC_006273.1 + 163148 0.66 0.9962
Target:  5'- cGGAGgcaccACCGCa--GUCGGAGGaGGAGa -3'
miRNA:   3'- cCCUU-----UGGCGcagCAGCCUUUgCCUC- -5'
29960 5' -53.1 NC_006273.1 + 119033 0.66 0.9962
Target:  5'- aGGGggGuCgGCGUCGgugUGGA---GGAGa -3'
miRNA:   3'- -CCCuuU-GgCGCAGCa--GCCUuugCCUC- -5'
29960 5' -53.1 NC_006273.1 + 116973 0.66 0.9962
Target:  5'- uGGGAAGCUGCGgCGgcUUGGGcagcAGCGGcGg -3'
miRNA:   3'- -CCCUUUGGCGCaGC--AGCCU----UUGCCuC- -5'
29960 5' -53.1 NC_006273.1 + 51014 0.66 0.9962
Target:  5'- cGGGGAAUCGCGgcauuuUUGGGAuuuUGGAGu -3'
miRNA:   3'- -CCCUUUGGCGCagc---AGCCUUu--GCCUC- -5'
29960 5' -53.1 NC_006273.1 + 188755 0.66 0.996143
Target:  5'- cGGAAACCgacacgauaggcaGCGUggucggcucCGUCGGcguGCGGGGu -3'
miRNA:   3'- cCCUUUGG-------------CGCA---------GCAGCCuu-UGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 163743 0.66 0.996025
Target:  5'- cGGcAGGCCGCaucGUCGucgucuuccuccucUCGGAgaucgcGACGGAGa -3'
miRNA:   3'- cCC-UUUGGCG---CAGC--------------AGCCU------UUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 189023 0.66 0.996025
Target:  5'- cGGGGgccugugcgacgacAGCCGCGUgGUgGGGGccCGGAc -3'
miRNA:   3'- -CCCU--------------UUGGCGCAgCAgCCUUu-GCCUc -5'
29960 5' -53.1 NC_006273.1 + 105162 0.66 0.995592
Target:  5'- gGGGaAAGCgGCGUcCG-CGaGGACGGGGa -3'
miRNA:   3'- -CCC-UUUGgCGCA-GCaGCcUUUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 213130 0.66 0.995592
Target:  5'- cGGcGGAGCCGCGUCGcUCGccGGCGc-- -3'
miRNA:   3'- -CC-CUUUGGCGCAGC-AGCcuUUGCcuc -5'
29960 5' -53.1 NC_006273.1 + 115092 0.66 0.994906
Target:  5'- -aGGGACC-C-UCGUCGGAAGCGGc- -3'
miRNA:   3'- ccCUUUGGcGcAGCAGCCUUUGCCuc -5'
29960 5' -53.1 NC_006273.1 + 230641 0.66 0.994906
Target:  5'- cGGGGAAUCGC-UCaGUCcGGAccUGGAGa -3'
miRNA:   3'- -CCCUUUGGCGcAG-CAG-CCUuuGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 193593 0.66 0.994906
Target:  5'- uGGAAguGCCGCGUUGggCGGGcagGGCuGGAa -3'
miRNA:   3'- cCCUU--UGGCGCAGCa-GCCU---UUG-CCUc -5'
29960 5' -53.1 NC_006273.1 + 118677 0.66 0.994906
Target:  5'- cGGGGucGACUGCGUgGggugcuggaagUGGAAGCGGuGc -3'
miRNA:   3'- -CCCU--UUGGCGCAgCa----------GCCUUUGCCuC- -5'
29960 5' -53.1 NC_006273.1 + 139685 0.66 0.994906
Target:  5'- aGGGAcACgGUuUUGUCGG-AugGGGGa -3'
miRNA:   3'- -CCCUuUGgCGcAGCAGCCuUugCCUC- -5'
29960 5' -53.1 NC_006273.1 + 13815 0.66 0.994906
Target:  5'- aGGGAACCagaugGCGacggaCGUCGGGaccGACGGAc -3'
miRNA:   3'- cCCUUUGG-----CGCa----GCAGCCU---UUGCCUc -5'
29960 5' -53.1 NC_006273.1 + 143423 0.66 0.994137
Target:  5'- cGGccuGCCGCG-CGUUGGAGaACGGc- -3'
miRNA:   3'- cCCuu-UGGCGCaGCAGCCUU-UGCCuc -5'
29960 5' -53.1 NC_006273.1 + 190373 0.66 0.994137
Target:  5'- uGGggGCCGCGgagggaGGAGAgGGAc -3'
miRNA:   3'- cCCuuUGGCGCagcag-CCUUUgCCUc -5'
29960 5' -53.1 NC_006273.1 + 46533 0.66 0.994137
Target:  5'- cGGAAuccgagacuGCCGCGcacCGUCGGGc-UGGAGa -3'
miRNA:   3'- cCCUU---------UGGCGCa--GCAGCCUuuGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 126994 0.66 0.994137
Target:  5'- uGGAGACCGCGguggCGgcCGGcaucaGGAGa -3'
miRNA:   3'- cCCUUUGGCGCa---GCa-GCCuuug-CCUC- -5'
29960 5' -53.1 NC_006273.1 + 99698 0.66 0.993276
Target:  5'- uGGGAggGACCGCgGUCGUCuuguaGAcGACGGuGu -3'
miRNA:   3'- -CCCU--UUGGCG-CAGCAGc----CU-UUGCCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.