miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29960 5' -53.1 NC_006273.1 + 26168 1.11 0.008492
Target:  5'- cGGGAAACCGCGUCGUCGGAAACGGAGc -3'
miRNA:   3'- -CCCUUUGGCGCAGCAGCCUUUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 26201 0.83 0.34837
Target:  5'- aGGGAAGCCGCGUcCG-CGGAaacGACGGAc -3'
miRNA:   3'- -CCCUUUGGCGCA-GCaGCCU---UUGCCUc -5'
29960 5' -53.1 NC_006273.1 + 189260 0.83 0.355966
Target:  5'- -cGuuGCCGuCGUCGUUGGAGACGGAGg -3'
miRNA:   3'- ccCuuUGGC-GCAGCAGCCUUUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 38227 0.81 0.473871
Target:  5'- cGGAAACCGCGgCGcCGGAggaAACGGGGa -3'
miRNA:   3'- cCCUUUGGCGCaGCaGCCU---UUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 222383 0.78 0.628187
Target:  5'- cGGAAAuCCGCcUUGUcCGGAGACGGAGu -3'
miRNA:   3'- cCCUUU-GGCGcAGCA-GCCUUUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 55013 0.76 0.735955
Target:  5'- uGGGggG-CGCGUCGUCGuGAucccggucGCGGAGc -3'
miRNA:   3'- -CCCuuUgGCGCAGCAGC-CUu-------UGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 1238 0.74 0.833427
Target:  5'- cGGGGGACUcuuGCGgCGgggaCGGGGACGGGGg -3'
miRNA:   3'- -CCCUUUGG---CGCaGCa---GCCUUUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 41176 0.74 0.833427
Target:  5'- cGGGGGACUcuuGCGgCGgggaCGGGGACGGGGg -3'
miRNA:   3'- -CCCUUUGG---CGCaGCa---GCCUUUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 1983 0.73 0.856812
Target:  5'- cGGGGAcgacgucgcGCCaGCGgcgagCGgcaCGGAGACGGAGg -3'
miRNA:   3'- -CCCUU---------UGG-CGCa----GCa--GCCUUUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 119118 0.73 0.856812
Target:  5'- cGGGGGACUGCGggaGaaacUCGGAGACGGc- -3'
miRNA:   3'- -CCCUUUGGCGCag-C----AGCCUUUGCCuc -5'
29960 5' -53.1 NC_006273.1 + 17113 0.73 0.856812
Target:  5'- cGGAacgccgucGACCGCGUUcccUgGGAGACGGAGa -3'
miRNA:   3'- cCCU--------UUGGCGCAGc--AgCCUUUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 196875 0.73 0.864232
Target:  5'- cGGGGAcgacgucgccGCCaGCGgcgagCGgcaCGGAGACGGAGg -3'
miRNA:   3'- -CCCUU----------UGG-CGCa----GCa--GCCUUUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 140920 0.72 0.885289
Target:  5'- cGGGGgucccagcccGGCCGgGcCGUCGGAuggggggucgAGCGGGGg -3'
miRNA:   3'- -CCCU----------UUGGCgCaGCAGCCU----------UUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 124041 0.72 0.898279
Target:  5'- aGGAGACUGuCGUCGUCGGuacuGGCGa-- -3'
miRNA:   3'- cCCUUUGGC-GCAGCAGCCu---UUGCcuc -5'
29960 5' -53.1 NC_006273.1 + 40969 0.71 0.910398
Target:  5'- gGGGGGugUGCGgggaCGgggggugugCGGGGACGGGGg -3'
miRNA:   3'- -CCCUUugGCGCa---GCa--------GCCUUUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 140791 0.71 0.910398
Target:  5'- cGGGAAGCCGgcggagGUCGcCGGGAGCaGcGAGg -3'
miRNA:   3'- -CCCUUUGGCg-----CAGCaGCCUUUG-C-CUC- -5'
29960 5' -53.1 NC_006273.1 + 1031 0.71 0.910398
Target:  5'- gGGGGGugUGCGgggaCGgggggugugCGGGGACGGGGg -3'
miRNA:   3'- -CCCUUugGCGCa---GCa--------GCCUUUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 37317 0.71 0.916125
Target:  5'- cGGuGGAACCGUGcCGUugcuuuggCGGcAGCGGAGg -3'
miRNA:   3'- -CC-CUUUGGCGCaGCA--------GCCuUUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 116804 0.7 0.936783
Target:  5'- uGGAGGCCGCGacgUCGcuuUCGGGcuCGGAa -3'
miRNA:   3'- cCCUUUGGCGC---AGC---AGCCUuuGCCUc -5'
29960 5' -53.1 NC_006273.1 + 1116 0.7 0.936783
Target:  5'- cGGGcuGuuGCGU-GcCGGGGACGGGGg -3'
miRNA:   3'- -CCCuuUggCGCAgCaGCCUUUGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.