miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29960 5' -53.1 NC_006273.1 + 99698 0.66 0.993276
Target:  5'- uGGGAggGACCGCgGUCGUCuuguaGAcGACGGuGu -3'
miRNA:   3'- -CCCU--UUGGCG-CAGCAGc----CU-UUGCCuC- -5'
29960 5' -53.1 NC_006273.1 + 86474 0.66 0.993276
Target:  5'- gGGGGAugCGCGUUGUCaGGuccAGCaGGu- -3'
miRNA:   3'- -CCCUUugGCGCAGCAG-CCu--UUG-CCuc -5'
29960 5' -53.1 NC_006273.1 + 104022 0.66 0.993276
Target:  5'- --uAGACgGCGUCGUUGGAAACa--- -3'
miRNA:   3'- cccUUUGgCGCAGCAGCCUUUGccuc -5'
29960 5' -53.1 NC_006273.1 + 140843 0.66 0.993276
Target:  5'- cGGGGAGgaGCGggGUgGGGGugGGAa -3'
miRNA:   3'- -CCCUUUggCGCagCAgCCUUugCCUc -5'
29960 5' -53.1 NC_006273.1 + 37947 0.66 0.993276
Target:  5'- gGGGucACCGCGUUGuUCGcGAAACa--- -3'
miRNA:   3'- -CCCuuUGGCGCAGC-AGC-CUUUGccuc -5'
29960 5' -53.1 NC_006273.1 + 115361 0.67 0.992318
Target:  5'- cGGcGAAaacACCGuCG-CGUCGGAcgcGACGGuGa -3'
miRNA:   3'- -CC-CUU---UGGC-GCaGCAGCCU---UUGCCuC- -5'
29960 5' -53.1 NC_006273.1 + 41013 0.67 0.992318
Target:  5'- cGGGGACgGgGggUGUgCGGGGACGGGGc -3'
miRNA:   3'- cCCUUUGgCgCa-GCA-GCCUUUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 167672 0.67 0.992318
Target:  5'- cGGGGucGGCCGCcguUCGUCGuc-ACGGGGc -3'
miRNA:   3'- -CCCU--UUGGCGc--AGCAGCcuuUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 1075 0.67 0.992318
Target:  5'- cGGGGACgGgGggUGUgCGGGGACGGGGc -3'
miRNA:   3'- cCCUUUGgCgCa-GCA-GCCUUUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 41401 0.67 0.991253
Target:  5'- cGGGcAACgGCGcCGUCGGAGcccaGGGc -3'
miRNA:   3'- -CCCuUUGgCGCaGCAGCCUUug--CCUc -5'
29960 5' -53.1 NC_006273.1 + 122846 0.67 0.991253
Target:  5'- cGGcGACCGCGUCagacggggCGGcGACGGGu -3'
miRNA:   3'- cCCuUUGGCGCAGca------GCCuUUGCCUc -5'
29960 5' -53.1 NC_006273.1 + 211288 0.67 0.990076
Target:  5'- uGGAGGCCGCGUUGgUGGcccCGGuGg -3'
miRNA:   3'- cCCUUUGGCGCAGCaGCCuuuGCCuC- -5'
29960 5' -53.1 NC_006273.1 + 1178 0.67 0.990076
Target:  5'- aGGGGcauuUCGCGg---CGGGGACGGGGa -3'
miRNA:   3'- -CCCUuu--GGCGCagcaGCCUUUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 41116 0.67 0.990076
Target:  5'- aGGGGcauuUCGCGg---CGGGGACGGGGa -3'
miRNA:   3'- -CCCUuu--GGCGCagcaGCCUUUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 157367 0.67 0.990076
Target:  5'- uGGuGggGCUGCGUCGccugcgaCGGcGggUGGAGa -3'
miRNA:   3'- -CC-CuuUGGCGCAGCa------GCC-UuuGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 148038 0.67 0.990076
Target:  5'- cGGGAGcagaacCCGCGUCGUCGacGACGu-- -3'
miRNA:   3'- -CCCUUu-----GGCGCAGCAGCcuUUGCcuc -5'
29960 5' -53.1 NC_006273.1 + 131128 0.67 0.989952
Target:  5'- ----cGCCGUGUCGUCGuaagcucaucggcGGGAUGGAGu -3'
miRNA:   3'- cccuuUGGCGCAGCAGC-------------CUUUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 187292 0.67 0.988778
Target:  5'- uGGuGAACUGCGUCG-CGGAucccgucACGGGu -3'
miRNA:   3'- -CCcUUUGGCGCAGCaGCCUu------UGCCUc -5'
29960 5' -53.1 NC_006273.1 + 41451 0.67 0.988778
Target:  5'- uGGGuacCCGCGaagguaggUGUCGGGGcCGGAGc -3'
miRNA:   3'- -CCCuuuGGCGCa-------GCAGCCUUuGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 51561 0.67 0.987352
Target:  5'- gGGGGggUgGUGgCGgCGGAgGACGGAGg -3'
miRNA:   3'- -CCCUuuGgCGCaGCaGCCU-UUGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.