Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29960 | 5' | -53.1 | NC_006273.1 | + | 1031 | 0.71 | 0.910398 |
Target: 5'- gGGGGGugUGCGgggaCGgggggugugCGGGGACGGGGg -3' miRNA: 3'- -CCCUUugGCGCa---GCa--------GCCUUUGCCUC- -5' |
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29960 | 5' | -53.1 | NC_006273.1 | + | 1075 | 0.67 | 0.992318 |
Target: 5'- cGGGGACgGgGggUGUgCGGGGACGGGGc -3' miRNA: 3'- cCCUUUGgCgCa-GCA-GCCUUUGCCUC- -5' |
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29960 | 5' | -53.1 | NC_006273.1 | + | 1116 | 0.7 | 0.936783 |
Target: 5'- cGGGcuGuuGCGU-GcCGGGGACGGGGg -3' miRNA: 3'- -CCCuuUggCGCAgCaGCCUUUGCCUC- -5' |
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29960 | 5' | -53.1 | NC_006273.1 | + | 1178 | 0.67 | 0.990076 |
Target: 5'- aGGGGcauuUCGCGg---CGGGGACGGGGa -3' miRNA: 3'- -CCCUuu--GGCGCagcaGCCUUUGCCUC- -5' |
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29960 | 5' | -53.1 | NC_006273.1 | + | 1238 | 0.74 | 0.833427 |
Target: 5'- cGGGGGACUcuuGCGgCGgggaCGGGGACGGGGg -3' miRNA: 3'- -CCCUUUGG---CGCaGCa---GCCUUUGCCUC- -5' |
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29960 | 5' | -53.1 | NC_006273.1 | + | 1983 | 0.73 | 0.856812 |
Target: 5'- cGGGGAcgacgucgcGCCaGCGgcgagCGgcaCGGAGACGGAGg -3' miRNA: 3'- -CCCUU---------UGG-CGCa----GCa--GCCUUUGCCUC- -5' |
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29960 | 5' | -53.1 | NC_006273.1 | + | 7917 | 0.69 | 0.973147 |
Target: 5'- aGGuauCCGCGUgGaCGGAAACGGcGg -3' miRNA: 3'- cCCuuuGGCGCAgCaGCCUUUGCCuC- -5' |
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29960 | 5' | -53.1 | NC_006273.1 | + | 13815 | 0.66 | 0.994906 |
Target: 5'- aGGGAACCagaugGCGacggaCGUCGGGaccGACGGAc -3' miRNA: 3'- cCCUUUGG-----CGCa----GCAGCCU---UUGCCUc -5' |
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29960 | 5' | -53.1 | NC_006273.1 | + | 14199 | 0.7 | 0.949925 |
Target: 5'- cGGAGcacuuuCCGCGgCGcUUGGGAGCGGGGu -3' miRNA: 3'- cCCUUu-----GGCGCaGC-AGCCUUUGCCUC- -5' |
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29960 | 5' | -53.1 | NC_006273.1 | + | 17113 | 0.73 | 0.856812 |
Target: 5'- cGGAacgccgucGACCGCGUUcccUgGGAGACGGAGa -3' miRNA: 3'- cCCU--------UUGGCGCAGc--AgCCUUUGCCUC- -5' |
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29960 | 5' | -53.1 | NC_006273.1 | + | 26168 | 1.11 | 0.008492 |
Target: 5'- cGGGAAACCGCGUCGUCGGAAACGGAGc -3' miRNA: 3'- -CCCUUUGGCGCAGCAGCCUUUGCCUC- -5' |
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29960 | 5' | -53.1 | NC_006273.1 | + | 26201 | 0.83 | 0.34837 |
Target: 5'- aGGGAAGCCGCGUcCG-CGGAaacGACGGAc -3' miRNA: 3'- -CCCUUUGGCGCA-GCaGCCU---UUGCCUc -5' |
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29960 | 5' | -53.1 | NC_006273.1 | + | 36850 | 0.69 | 0.973147 |
Target: 5'- aGGGAcacgcgcuacguAGCCG-GUCG-CGGAccGCGGAGu -3' miRNA: 3'- -CCCU------------UUGGCgCAGCaGCCUu-UGCCUC- -5' |
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29960 | 5' | -53.1 | NC_006273.1 | + | 37317 | 0.71 | 0.916125 |
Target: 5'- cGGuGGAACCGUGcCGUugcuuuggCGGcAGCGGAGg -3' miRNA: 3'- -CC-CUUUGGCGCaGCA--------GCCuUUGCCUC- -5' |
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29960 | 5' | -53.1 | NC_006273.1 | + | 37947 | 0.66 | 0.993276 |
Target: 5'- gGGGucACCGCGUUGuUCGcGAAACa--- -3' miRNA: 3'- -CCCuuUGGCGCAGC-AGC-CUUUGccuc -5' |
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29960 | 5' | -53.1 | NC_006273.1 | + | 38227 | 0.81 | 0.473871 |
Target: 5'- cGGAAACCGCGgCGcCGGAggaAACGGGGa -3' miRNA: 3'- cCCUUUGGCGCaGCaGCCU---UUGCCUC- -5' |
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29960 | 5' | -53.1 | NC_006273.1 | + | 40969 | 0.71 | 0.910398 |
Target: 5'- gGGGGGugUGCGgggaCGgggggugugCGGGGACGGGGg -3' miRNA: 3'- -CCCUUugGCGCa---GCa--------GCCUUUGCCUC- -5' |
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29960 | 5' | -53.1 | NC_006273.1 | + | 41013 | 0.67 | 0.992318 |
Target: 5'- cGGGGACgGgGggUGUgCGGGGACGGGGc -3' miRNA: 3'- cCCUUUGgCgCa-GCA-GCCUUUGCCUC- -5' |
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29960 | 5' | -53.1 | NC_006273.1 | + | 41054 | 0.7 | 0.936783 |
Target: 5'- cGGGcuGuuGCGU-GcCGGGGACGGGGg -3' miRNA: 3'- -CCCuuUggCGCAgCaGCCUUUGCCUC- -5' |
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29960 | 5' | -53.1 | NC_006273.1 | + | 41116 | 0.67 | 0.990076 |
Target: 5'- aGGGGcauuUCGCGg---CGGGGACGGGGa -3' miRNA: 3'- -CCCUuu--GGCGCagcaGCCUUUGCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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