miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29960 5' -53.1 NC_006273.1 + 204731 0.67 0.987202
Target:  5'- aGGAAGCCgcccggcGCGUCGUCuGuguGCGGGa -3'
miRNA:   3'- cCCUUUGG-------CGCAGCAGcCuu-UGCCUc -5'
29960 5' -53.1 NC_006273.1 + 79944 0.68 0.978032
Target:  5'- -aGAAcCCGCGUCGcCGGgcACGGcGg -3'
miRNA:   3'- ccCUUuGGCGCAGCaGCCuuUGCCuC- -5'
29960 5' -53.1 NC_006273.1 + 94677 0.68 0.980212
Target:  5'- cGGGggGCUGgGUCG-CGGAcccCGGu- -3'
miRNA:   3'- -CCCuuUGGCgCAGCaGCCUuu-GCCuc -5'
29960 5' -53.1 NC_006273.1 + 94915 0.68 0.980212
Target:  5'- uGGGGGcCCG-GUCaggagcuUCGGGAGCGGGGu -3'
miRNA:   3'- -CCCUUuGGCgCAGc------AGCCUUUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 119498 0.68 0.982227
Target:  5'- uGGAAGCCguuguccggcaaGCGUCGUaggugCGGguACGGAu -3'
miRNA:   3'- cCCUUUGG------------CGCAGCA-----GCCuuUGCCUc -5'
29960 5' -53.1 NC_006273.1 + 126555 0.68 0.982227
Target:  5'- cGGGAAACCacCGUCGUgaCGGugauaguGCGGGa -3'
miRNA:   3'- -CCCUUUGGc-GCAGCA--GCCuu-----UGCCUc -5'
29960 5' -53.1 NC_006273.1 + 117919 0.68 0.982227
Target:  5'- aGGAAACCGCGgcggcgucgUCGUCGuccuCGGAc -3'
miRNA:   3'- cCCUUUGGCGC---------AGCAGCcuuuGCCUc -5'
29960 5' -53.1 NC_006273.1 + 42041 0.67 0.98579
Target:  5'- cGGGAGgcGCC-CGguuuacgUGUCGGggGCGGcGg -3'
miRNA:   3'- -CCCUU--UGGcGCa------GCAGCCuuUGCCuC- -5'
29960 5' -53.1 NC_006273.1 + 130950 0.67 0.986431
Target:  5'- gGGGAgaGAUgGCGUaaacaccgucaacggCgGUCGGAGACGGGa -3'
miRNA:   3'- -CCCU--UUGgCGCA---------------G-CAGCCUUUGCCUc -5'
29960 5' -53.1 NC_006273.1 + 189869 0.69 0.973147
Target:  5'- gGGGAGA-CGCGUCGggCGGAccgcCGGGc -3'
miRNA:   3'- -CCCUUUgGCGCAGCa-GCCUuu--GCCUc -5'
29960 5' -53.1 NC_006273.1 + 123780 0.69 0.962455
Target:  5'- uGGGAAGCCGcCGUuucuucuucuugcgaCGUCgcGGggGCGGu- -3'
miRNA:   3'- -CCCUUUGGC-GCA---------------GCAG--CCuuUGCCuc -5'
29960 5' -53.1 NC_006273.1 + 174767 0.7 0.953866
Target:  5'- cGGGGAAuCCGCGUuccaaugcacCGUuccCGGccGCGGAGg -3'
miRNA:   3'- -CCCUUU-GGCGCA----------GCA---GCCuuUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 55013 0.76 0.735955
Target:  5'- uGGGggG-CGCGUCGUCGuGAucccggucGCGGAGc -3'
miRNA:   3'- -CCCuuUgGCGCAGCAGC-CUu-------UGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 1238 0.74 0.833427
Target:  5'- cGGGGGACUcuuGCGgCGgggaCGGGGACGGGGg -3'
miRNA:   3'- -CCCUUUGG---CGCaGCa---GCCUUUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 119118 0.73 0.856812
Target:  5'- cGGGGGACUGCGggaGaaacUCGGAGACGGc- -3'
miRNA:   3'- -CCCUUUGGCGCag-C----AGCCUUUGCCuc -5'
29960 5' -53.1 NC_006273.1 + 196875 0.73 0.864232
Target:  5'- cGGGGAcgacgucgccGCCaGCGgcgagCGgcaCGGAGACGGAGg -3'
miRNA:   3'- -CCCUU----------UGG-CGCa----GCa--GCCUUUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 124041 0.72 0.898279
Target:  5'- aGGAGACUGuCGUCGUCGGuacuGGCGa-- -3'
miRNA:   3'- cCCUUUGGC-GCAGCAGCCu---UUGCcuc -5'
29960 5' -53.1 NC_006273.1 + 1031 0.71 0.910398
Target:  5'- gGGGGGugUGCGgggaCGgggggugugCGGGGACGGGGg -3'
miRNA:   3'- -CCCUUugGCGCa---GCa--------GCCUUUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 1116 0.7 0.936783
Target:  5'- cGGGcuGuuGCGU-GcCGGGGACGGGGg -3'
miRNA:   3'- -CCCuuUggCGCAgCaGCCUUUGCCUC- -5'
29960 5' -53.1 NC_006273.1 + 116804 0.7 0.936783
Target:  5'- uGGAGGCCGCGacgUCGcuuUCGGGcuCGGAa -3'
miRNA:   3'- cCCUUUGGCGC---AGC---AGCCUuuGCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.