miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29962 3' -56 NC_006273.1 + 138698 0.66 0.966442
Target:  5'- gCGCCGUGCUCuugGCgCCGcggUGUCgaUGCu -3'
miRNA:   3'- aGUGGCACGAGca-CG-GGUa--GCAG--ACG- -5'
29962 3' -56 NC_006273.1 + 166917 0.66 0.963274
Target:  5'- -gGCCuGUgGCgUGUGCggCAUCGUCUGCg -3'
miRNA:   3'- agUGG-CA-CGaGCACGg-GUAGCAGACG- -5'
29962 3' -56 NC_006273.1 + 220410 0.66 0.963274
Target:  5'- aUCACCGUGC-CGUaaCCCggUGUaUGCa -3'
miRNA:   3'- -AGUGGCACGaGCAc-GGGuaGCAgACG- -5'
29962 3' -56 NC_006273.1 + 171404 0.66 0.963274
Target:  5'- cCACCGUGCg-GUGaCCCuuggcgUGUCgGCu -3'
miRNA:   3'- aGUGGCACGagCAC-GGGua----GCAGaCG- -5'
29962 3' -56 NC_006273.1 + 153033 0.66 0.959903
Target:  5'- -aGCCGUGCagcaacCGcaggaaGCUCAUCGUCUGg -3'
miRNA:   3'- agUGGCACGa-----GCa-----CGGGUAGCAGACg -5'
29962 3' -56 NC_006273.1 + 131826 0.66 0.959903
Target:  5'- uUCugCGUGCUUGccUGCUCAag--CUGCa -3'
miRNA:   3'- -AGugGCACGAGC--ACGGGUagcaGACG- -5'
29962 3' -56 NC_006273.1 + 131127 0.66 0.956325
Target:  5'- gCGCCGUGUcgUCGUaaGCUCAUCGgcgggauggagUUUGCc -3'
miRNA:   3'- aGUGGCACG--AGCA--CGGGUAGC-----------AGACG- -5'
29962 3' -56 NC_006273.1 + 204430 0.66 0.952536
Target:  5'- aCGCUGgGCUCGaaGCCCAgaUUGUCgGCc -3'
miRNA:   3'- aGUGGCaCGAGCa-CGGGU--AGCAGaCG- -5'
29962 3' -56 NC_006273.1 + 227359 0.66 0.952536
Target:  5'- gUCGCCGcGuCUCGUucgucgagGCCgAUCGaCUGCc -3'
miRNA:   3'- -AGUGGCaC-GAGCA--------CGGgUAGCaGACG- -5'
29962 3' -56 NC_006273.1 + 91169 0.67 0.94431
Target:  5'- gUCGuCCGaGCcgcCGUGCCgGUCGUC-GCa -3'
miRNA:   3'- -AGU-GGCaCGa--GCACGGgUAGCAGaCG- -5'
29962 3' -56 NC_006273.1 + 142804 0.67 0.94431
Target:  5'- cCGCCGUcGCUggugggcacgggCGUGCaCCGcgGUCUGCu -3'
miRNA:   3'- aGUGGCA-CGA------------GCACG-GGUagCAGACG- -5'
29962 3' -56 NC_006273.1 + 153944 0.67 0.94431
Target:  5'- uUUACCGcgaacGCcgCGUGCCCugcAUCaUCUGCg -3'
miRNA:   3'- -AGUGGCa----CGa-GCACGGG---UAGcAGACG- -5'
29962 3' -56 NC_006273.1 + 34103 0.67 0.94431
Target:  5'- cCGCCGUcgUCGcGCCCGUCG-CcGCa -3'
miRNA:   3'- aGUGGCAcgAGCaCGGGUAGCaGaCG- -5'
29962 3' -56 NC_006273.1 + 196774 0.67 0.939868
Target:  5'- -gGCCGUGCgUCG-GCaCCugaaccagCGUCUGUg -3'
miRNA:   3'- agUGGCACG-AGCaCG-GGua------GCAGACG- -5'
29962 3' -56 NC_006273.1 + 179649 0.67 0.939868
Target:  5'- cUCACCGUGCUguaacgccgcacCGaGUCgGUCaUCUGCu -3'
miRNA:   3'- -AGUGGCACGA------------GCaCGGgUAGcAGACG- -5'
29962 3' -56 NC_006273.1 + 65786 0.67 0.939868
Target:  5'- -uGCCGUcaaucagcGCUCGUGUCUgcGUCGcccCUGCg -3'
miRNA:   3'- agUGGCA--------CGAGCACGGG--UAGCa--GACG- -5'
29962 3' -56 NC_006273.1 + 1882 0.67 0.939868
Target:  5'- -gGCCGUGCgUCG-GCaCCugaaccagCGUCUGUg -3'
miRNA:   3'- agUGGCACG-AGCaCG-GGua------GCAGACG- -5'
29962 3' -56 NC_006273.1 + 234103 0.67 0.935204
Target:  5'- -gGCCGUccgaGCggcagcagCGUGCCCgcGUCGcgCUGCg -3'
miRNA:   3'- agUGGCA----CGa-------GCACGGG--UAGCa-GACG- -5'
29962 3' -56 NC_006273.1 + 42717 0.67 0.935204
Target:  5'- gCGCCGUGUuggCGUGCCgGUCcagguuaagGUCgaGCg -3'
miRNA:   3'- aGUGGCACGa--GCACGGgUAG---------CAGa-CG- -5'
29962 3' -56 NC_006273.1 + 39210 0.67 0.935204
Target:  5'- -gGCCGUccgaGCggcagcagCGUGCCCgcGUCGcgCUGCg -3'
miRNA:   3'- agUGGCA----CGa-------GCACGGG--UAGCa-GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.