Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29962 | 3' | -56 | NC_006273.1 | + | 153033 | 0.66 | 0.959903 |
Target: 5'- -aGCCGUGCagcaacCGcaggaaGCUCAUCGUCUGg -3' miRNA: 3'- agUGGCACGa-----GCa-----CGGGUAGCAGACg -5' |
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29962 | 3' | -56 | NC_006273.1 | + | 131127 | 0.66 | 0.956325 |
Target: 5'- gCGCCGUGUcgUCGUaaGCUCAUCGgcgggauggagUUUGCc -3' miRNA: 3'- aGUGGCACG--AGCA--CGGGUAGC-----------AGACG- -5' |
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29962 | 3' | -56 | NC_006273.1 | + | 171404 | 0.66 | 0.963274 |
Target: 5'- cCACCGUGCg-GUGaCCCuuggcgUGUCgGCu -3' miRNA: 3'- aGUGGCACGagCAC-GGGua----GCAGaCG- -5' |
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29962 | 3' | -56 | NC_006273.1 | + | 227359 | 0.66 | 0.952536 |
Target: 5'- gUCGCCGcGuCUCGUucgucgagGCCgAUCGaCUGCc -3' miRNA: 3'- -AGUGGCaC-GAGCA--------CGGgUAGCaGACG- -5' |
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29962 | 3' | -56 | NC_006273.1 | + | 131826 | 0.66 | 0.959903 |
Target: 5'- uUCugCGUGCUUGccUGCUCAag--CUGCa -3' miRNA: 3'- -AGugGCACGAGC--ACGGGUagcaGACG- -5' |
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29962 | 3' | -56 | NC_006273.1 | + | 204430 | 0.66 | 0.952536 |
Target: 5'- aCGCUGgGCUCGaaGCCCAgaUUGUCgGCc -3' miRNA: 3'- aGUGGCaCGAGCa-CGGGU--AGCAGaCG- -5' |
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29962 | 3' | -56 | NC_006273.1 | + | 166917 | 0.66 | 0.963274 |
Target: 5'- -gGCCuGUgGCgUGUGCggCAUCGUCUGCg -3' miRNA: 3'- agUGG-CA-CGaGCACGg-GUAGCAGACG- -5' |
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29962 | 3' | -56 | NC_006273.1 | + | 138698 | 0.66 | 0.966442 |
Target: 5'- gCGCCGUGCUCuugGCgCCGcggUGUCgaUGCu -3' miRNA: 3'- aGUGGCACGAGca-CG-GGUa--GCAG--ACG- -5' |
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29962 | 3' | -56 | NC_006273.1 | + | 220410 | 0.66 | 0.963274 |
Target: 5'- aUCACCGUGC-CGUaaCCCggUGUaUGCa -3' miRNA: 3'- -AGUGGCACGaGCAc-GGGuaGCAgACG- -5' |
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29962 | 3' | -56 | NC_006273.1 | + | 91169 | 0.67 | 0.94431 |
Target: 5'- gUCGuCCGaGCcgcCGUGCCgGUCGUC-GCa -3' miRNA: 3'- -AGU-GGCaCGa--GCACGGgUAGCAGaCG- -5' |
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29962 | 3' | -56 | NC_006273.1 | + | 142804 | 0.67 | 0.94431 |
Target: 5'- cCGCCGUcGCUggugggcacgggCGUGCaCCGcgGUCUGCu -3' miRNA: 3'- aGUGGCA-CGA------------GCACG-GGUagCAGACG- -5' |
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29962 | 3' | -56 | NC_006273.1 | + | 153944 | 0.67 | 0.94431 |
Target: 5'- uUUACCGcgaacGCcgCGUGCCCugcAUCaUCUGCg -3' miRNA: 3'- -AGUGGCa----CGa-GCACGGG---UAGcAGACG- -5' |
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29962 | 3' | -56 | NC_006273.1 | + | 233174 | 0.67 | 0.923628 |
Target: 5'- uUCACCGcG-UCGUGCCCAgcgccaugugcgggUCGUUucgGCg -3' miRNA: 3'- -AGUGGCaCgAGCACGGGU--------------AGCAGa--CG- -5' |
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29962 | 3' | -56 | NC_006273.1 | + | 179649 | 0.67 | 0.939868 |
Target: 5'- cUCACCGUGCUguaacgccgcacCGaGUCgGUCaUCUGCu -3' miRNA: 3'- -AGUGGCACGA------------GCaCGGgUAGcAGACG- -5' |
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29962 | 3' | -56 | NC_006273.1 | + | 65786 | 0.67 | 0.939868 |
Target: 5'- -uGCCGUcaaucagcGCUCGUGUCUgcGUCGcccCUGCg -3' miRNA: 3'- agUGGCA--------CGAGCACGGG--UAGCa--GACG- -5' |
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29962 | 3' | -56 | NC_006273.1 | + | 234103 | 0.67 | 0.935204 |
Target: 5'- -gGCCGUccgaGCggcagcagCGUGCCCgcGUCGcgCUGCg -3' miRNA: 3'- agUGGCA----CGa-------GCACGGG--UAGCa-GACG- -5' |
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29962 | 3' | -56 | NC_006273.1 | + | 42717 | 0.67 | 0.935204 |
Target: 5'- gCGCCGUGUuggCGUGCCgGUCcagguuaagGUCgaGCg -3' miRNA: 3'- aGUGGCACGa--GCACGGgUAG---------CAGa-CG- -5' |
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29962 | 3' | -56 | NC_006273.1 | + | 1882 | 0.67 | 0.939868 |
Target: 5'- -gGCCGUGCgUCG-GCaCCugaaccagCGUCUGUg -3' miRNA: 3'- agUGGCACG-AGCaCG-GGua------GCAGACG- -5' |
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29962 | 3' | -56 | NC_006273.1 | + | 39210 | 0.67 | 0.935204 |
Target: 5'- -gGCCGUccgaGCggcagcagCGUGCCCgcGUCGcgCUGCg -3' miRNA: 3'- agUGGCA----CGa-------GCACGGG--UAGCa-GACG- -5' |
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29962 | 3' | -56 | NC_006273.1 | + | 68082 | 0.67 | 0.930317 |
Target: 5'- cCGCCGcUGUggccggaGUGCCCGUCG-CcGCa -3' miRNA: 3'- aGUGGC-ACGag-----CACGGGUAGCaGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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