miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29962 5' -51.2 NC_006273.1 + 170964 0.66 0.999011
Target:  5'- cGCGgcCAgGUgugcGGGUucguAGCGcGCACCCa -3'
miRNA:   3'- -UGCauGUgCAa---CCCG----UUGCuUGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 77185 0.66 0.999011
Target:  5'- cACGcUGCACGaccuGCAcgacaucuuccGCGAGCACCCc -3'
miRNA:   3'- -UGC-AUGUGCaaccCGU-----------UGCUUGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 75160 0.66 0.999011
Target:  5'- cGCGUuacaGCGgcUGGaGCAcCGAguACACCCa -3'
miRNA:   3'- -UGCAug--UGCa-ACC-CGUuGCU--UGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 29254 0.66 0.999011
Target:  5'- -gGUGCugACGUccuuugGGGCAGuCGGGCACgCg -3'
miRNA:   3'- ugCAUG--UGCAa-----CCCGUU-GCUUGUGgG- -5'
29962 5' -51.2 NC_006273.1 + 67465 0.66 0.999011
Target:  5'- gACGUGCAgCGUgucuuGGCc-CGGGCACCg -3'
miRNA:   3'- -UGCAUGU-GCAac---CCGuuGCUUGUGGg -5'
29962 5' -51.2 NC_006273.1 + 30488 0.66 0.999011
Target:  5'- cACGaGCACGc-GGGCG-CGcAGCGCCa -3'
miRNA:   3'- -UGCaUGUGCaaCCCGUuGC-UUGUGGg -5'
29962 5' -51.2 NC_006273.1 + 232518 0.66 0.999011
Target:  5'- gGCGUACGCGUgacuucucGCAACGAucCAUCg -3'
miRNA:   3'- -UGCAUGUGCAacc-----CGUUGCUu-GUGGg -5'
29962 5' -51.2 NC_006273.1 + 189864 0.66 0.999011
Target:  5'- gGCGgggggagACGCGUcGGGCGGaccgcCGGGCAUCg -3'
miRNA:   3'- -UGCa------UGUGCAaCCCGUU-----GCUUGUGGg -5'
29962 5' -51.2 NC_006273.1 + 206434 0.66 0.998891
Target:  5'- gACGU-CGCGaccguggaaacccGGGCAACGcGugGCCCu -3'
miRNA:   3'- -UGCAuGUGCaa-----------CCCGUUGC-UugUGGG- -5'
29962 5' -51.2 NC_006273.1 + 98166 0.66 0.998805
Target:  5'- --cUGCGguUUGGGCGcCGAGCGCUCg -3'
miRNA:   3'- ugcAUGUgcAACCCGUuGCUUGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 82763 0.66 0.998805
Target:  5'- uUGUACGCGcgGccguGCAGCGGgccaccgagacACACCCg -3'
miRNA:   3'- uGCAUGUGCaaCc---CGUUGCU-----------UGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 44517 0.66 0.998805
Target:  5'- cGCGcGCACGUc-GGCGGCGAuaGCCa -3'
miRNA:   3'- -UGCaUGUGCAacCCGUUGCUugUGGg -5'
29962 5' -51.2 NC_006273.1 + 164667 0.66 0.998805
Target:  5'- aGCGUGUACGUgcucGGGUGcCGggUACaCCa -3'
miRNA:   3'- -UGCAUGUGCAa---CCCGUuGCuuGUG-GG- -5'
29962 5' -51.2 NC_006273.1 + 35213 0.66 0.998805
Target:  5'- ---aACGCcgUGGGCAACGAAaccagaaggaGCCCu -3'
miRNA:   3'- ugcaUGUGcaACCCGUUGCUUg---------UGGG- -5'
29962 5' -51.2 NC_006273.1 + 131481 0.66 0.998805
Target:  5'- gGCGUACGCcgUGGcGCGcaaccgccGCGAcuACACCg -3'
miRNA:   3'- -UGCAUGUGcaACC-CGU--------UGCU--UGUGGg -5'
29962 5' -51.2 NC_006273.1 + 226708 0.66 0.998665
Target:  5'- uGCGUACcCGcuacgGGaacgccagcgccugcGUGACGGGCACCCa -3'
miRNA:   3'- -UGCAUGuGCaa---CC---------------CGUUGCUUGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 70771 0.66 0.998665
Target:  5'- -gGUGCGCGUggugaucgUGGGCcaggacccguacugcGACGGcaGCGCCa -3'
miRNA:   3'- ugCAUGUGCA--------ACCCG---------------UUGCU--UGUGGg -5'
29962 5' -51.2 NC_006273.1 + 30148 0.66 0.998564
Target:  5'- cAUGUGaCGCGccgagucagUGGGCGAgccCGGGgGCCCg -3'
miRNA:   3'- -UGCAU-GUGCa--------ACCCGUU---GCUUgUGGG- -5'
29962 5' -51.2 NC_006273.1 + 15036 0.66 0.998564
Target:  5'- uGCccGCACGccccgGGGCGugcCGAGCugCCu -3'
miRNA:   3'- -UGcaUGUGCaa---CCCGUu--GCUUGugGG- -5'
29962 5' -51.2 NC_006273.1 + 102398 0.66 0.998564
Target:  5'- -gGUAgGCGUcGGGCAcgAUGAACAgCg -3'
miRNA:   3'- ugCAUgUGCAaCCCGU--UGCUUGUgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.