miRNA display CGI


Results 1 - 20 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29962 5' -51.2 NC_006273.1 + 30148 0.66 0.998564
Target:  5'- cAUGUGaCGCGccgagucagUGGGCGAgccCGGGgGCCCg -3'
miRNA:   3'- -UGCAU-GUGCa--------ACCCGUU---GCUUgUGGG- -5'
29962 5' -51.2 NC_006273.1 + 30488 0.66 0.999011
Target:  5'- cACGaGCACGc-GGGCG-CGcAGCGCCa -3'
miRNA:   3'- -UGCaUGUGCaaCCCGUuGC-UUGUGGg -5'
29962 5' -51.2 NC_006273.1 + 164667 0.66 0.998805
Target:  5'- aGCGUGUACGUgcucGGGUGcCGggUACaCCa -3'
miRNA:   3'- -UGCAUGUGCAa---CCCGUuGCuuGUG-GG- -5'
29962 5' -51.2 NC_006273.1 + 126110 0.66 0.9984
Target:  5'- -gGUACACGUUcauagGGaagacGCGaaagagguccugcacGCGGACGCCCa -3'
miRNA:   3'- ugCAUGUGCAA-----CC-----CGU---------------UGCUUGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 190063 0.66 0.998283
Target:  5'- -----gACGgcgGGGgGACGAACACCg -3'
miRNA:   3'- ugcaugUGCaa-CCCgUUGCUUGUGGg -5'
29962 5' -51.2 NC_006273.1 + 102398 0.66 0.998564
Target:  5'- -gGUAgGCGUcGGGCAcgAUGAACAgCg -3'
miRNA:   3'- ugCAUgUGCAaCCCGU--UGCUUGUgGg -5'
29962 5' -51.2 NC_006273.1 + 48949 0.66 0.998564
Target:  5'- uGCGUcauCACGUUucGaGGCAGCGAcaGCUCg -3'
miRNA:   3'- -UGCAu--GUGCAA--C-CCGUUGCUugUGGG- -5'
29962 5' -51.2 NC_006273.1 + 135392 0.66 0.998564
Target:  5'- cGCGUgcacgcgcugcuuucGCACGcaccugugugaucUGGGCAGCGGcugcGCGCUCg -3'
miRNA:   3'- -UGCA---------------UGUGCa------------ACCCGUUGCU----UGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 129621 0.66 0.998564
Target:  5'- cCGUGCACGUUcgcgccuGCAACcu-CACCCa -3'
miRNA:   3'- uGCAUGUGCAAcc-----CGUUGcuuGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 232518 0.66 0.999011
Target:  5'- gGCGUACGCGUgacuucucGCAACGAucCAUCg -3'
miRNA:   3'- -UGCAUGUGCAacc-----CGUUGCUu-GUGGg -5'
29962 5' -51.2 NC_006273.1 + 164526 0.66 0.998564
Target:  5'- cGCGaaACACGUUGuugagggagggcGGCGGCGGucgGCCCg -3'
miRNA:   3'- -UGCa-UGUGCAAC------------CCGUUGCUug-UGGG- -5'
29962 5' -51.2 NC_006273.1 + 15036 0.66 0.998564
Target:  5'- uGCccGCACGccccgGGGCGugcCGAGCugCCu -3'
miRNA:   3'- -UGcaUGUGCaa---CCCGUu--GCUUGugGG- -5'
29962 5' -51.2 NC_006273.1 + 94711 0.66 0.998538
Target:  5'- uCGUucCGCGgUGGGCGAcCGGGgauccccCACCCa -3'
miRNA:   3'- uGCAu-GUGCaACCCGUU-GCUU-------GUGGG- -5'
29962 5' -51.2 NC_006273.1 + 226708 0.66 0.998665
Target:  5'- uGCGUACcCGcuacgGGaacgccagcgccugcGUGACGGGCACCCa -3'
miRNA:   3'- -UGCAUGuGCaa---CC---------------CGUUGCUUGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 74632 0.66 0.998564
Target:  5'- cCGUGCACGUacuUGaggaaGGCGGCGuACuucugACCCg -3'
miRNA:   3'- uGCAUGUGCA---AC-----CCGUUGCuUG-----UGGG- -5'
29962 5' -51.2 NC_006273.1 + 178326 0.66 0.998283
Target:  5'- gACGUucucaggauCAUGUUucaugcgcucgcGGGCcGCGGACGCCUc -3'
miRNA:   3'- -UGCAu--------GUGCAA------------CCCGuUGCUUGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 63010 0.66 0.998283
Target:  5'- ---aGCACGUcUGGaGCAACGuGACACUg -3'
miRNA:   3'- ugcaUGUGCA-ACC-CGUUGC-UUGUGGg -5'
29962 5' -51.2 NC_006273.1 + 35213 0.66 0.998805
Target:  5'- ---aACGCcgUGGGCAACGAAaccagaaggaGCCCu -3'
miRNA:   3'- ugcaUGUGcaACCCGUUGCUUg---------UGGG- -5'
29962 5' -51.2 NC_006273.1 + 82309 0.66 0.997957
Target:  5'- gACGU-CACGgUGGucccguCGGCGGACACCa -3'
miRNA:   3'- -UGCAuGUGCaACCc-----GUUGCUUGUGGg -5'
29962 5' -51.2 NC_006273.1 + 164300 0.66 0.99758
Target:  5'- gUGUGCGCGUc-GGCGccccacagcAUGAACACCa -3'
miRNA:   3'- uGCAUGUGCAacCCGU---------UGCUUGUGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.