miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29962 5' -51.2 NC_006273.1 + 20773 1.12 0.00919
Target:  5'- cACGUACACGUUGGGCAACGAACACCCu -3'
miRNA:   3'- -UGCAUGUGCAACCCGUUGCUUGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 129502 0.79 0.620286
Target:  5'- ---cACGCGUUGcuGCAACGGACACCCu -3'
miRNA:   3'- ugcaUGUGCAACc-CGUUGCUUGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 141167 0.78 0.711325
Target:  5'- cGCGgacUGCGcCGggGGGCGGCGGGCACgCCg -3'
miRNA:   3'- -UGC---AUGU-GCaaCCCGUUGCUUGUG-GG- -5'
29962 5' -51.2 NC_006273.1 + 114522 0.77 0.731047
Target:  5'- gGCGUGCACGgcGGGCGuuaugacacGCGGcCGCCUu -3'
miRNA:   3'- -UGCAUGUGCaaCCCGU---------UGCUuGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 4208 0.77 0.740784
Target:  5'- cGCGacagGCGCGUcgaggGGGCAG-GAACACCCu -3'
miRNA:   3'- -UGCa---UGUGCAa----CCCGUUgCUUGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 192548 0.75 0.823119
Target:  5'- gACGUgugAC-CGUUGGGCAACGGaacggcguuucACugCCa -3'
miRNA:   3'- -UGCA---UGuGCAACCCGUUGCU-----------UGugGG- -5'
29962 5' -51.2 NC_006273.1 + 149418 0.74 0.854833
Target:  5'- gACGUccgcugcccgaugGCACGggGGGCGACG-GC-CCCg -3'
miRNA:   3'- -UGCA-------------UGUGCaaCCCGUUGCuUGuGGG- -5'
29962 5' -51.2 NC_006273.1 + 15915 0.74 0.863246
Target:  5'- gGCGUACACGcUGGGaaGACGgAGCuCCCa -3'
miRNA:   3'- -UGCAUGUGCaACCCg-UUGC-UUGuGGG- -5'
29962 5' -51.2 NC_006273.1 + 103271 0.74 0.870677
Target:  5'- gUGUACGCGguagacGGGCAGCGGuCGCuCCa -3'
miRNA:   3'- uGCAUGUGCaa----CCCGUUGCUuGUG-GG- -5'
29962 5' -51.2 NC_006273.1 + 21625 0.74 0.891678
Target:  5'- uGCGUGC----UGGGCAACGAG-ACCCa -3'
miRNA:   3'- -UGCAUGugcaACCCGUUGCUUgUGGG- -5'
29962 5' -51.2 NC_006273.1 + 141333 0.73 0.898233
Target:  5'- uGCGUggccGCACaccuGUUGGaGCAACGGGCGgCCg -3'
miRNA:   3'- -UGCA----UGUG----CAACC-CGUUGCUUGUgGG- -5'
29962 5' -51.2 NC_006273.1 + 144642 0.73 0.910652
Target:  5'- gGCGUGCucaaGcaGGGCAGCGGucGCACCUu -3'
miRNA:   3'- -UGCAUGug--CaaCCCGUUGCU--UGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 2371 0.73 0.911248
Target:  5'- gGCGUGCugGgcgcgcuggcgcugGGGC-GCGAgucgGCGCCCg -3'
miRNA:   3'- -UGCAUGugCaa------------CCCGuUGCU----UGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 197264 0.73 0.911248
Target:  5'- gGCGUGCugGgcgcgcuggcgcugGGGC-GCGAgucgGCGCCCg -3'
miRNA:   3'- -UGCAUGugCaa------------CCCGuUGCU----UGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 108192 0.73 0.922135
Target:  5'- gACGUAcCGCGuUUGGGCGccAUGGAUGCCg -3'
miRNA:   3'- -UGCAU-GUGC-AACCCGU--UGCUUGUGGg -5'
29962 5' -51.2 NC_006273.1 + 52937 0.72 0.937584
Target:  5'- -aGUGCAac-UGGGCAACGAAUGCUg -3'
miRNA:   3'- ugCAUGUgcaACCCGUUGCUUGUGGg -5'
29962 5' -51.2 NC_006273.1 + 149386 0.72 0.942262
Target:  5'- gGCGUGCuguUGgucugGGGCGACGAGCGguugguggguCCCu -3'
miRNA:   3'- -UGCAUGu--GCaa---CCCGUUGCUUGU----------GGG- -5'
29962 5' -51.2 NC_006273.1 + 120604 0.72 0.942262
Target:  5'- gACGUuuGgGUUGcGCAGCGGGCugCCa -3'
miRNA:   3'- -UGCAugUgCAACcCGUUGCUUGugGG- -5'
29962 5' -51.2 NC_006273.1 + 101563 0.72 0.942262
Target:  5'- cCGUGCGCGacGGGCGcgGCGuucGCGCUCg -3'
miRNA:   3'- uGCAUGUGCaaCCCGU--UGCu--UGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 146152 0.72 0.942262
Target:  5'- cGCGUACGauucgcgaGUcGGGaAugGGACACCCg -3'
miRNA:   3'- -UGCAUGUg-------CAaCCCgUugCUUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.