miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29962 5' -51.2 NC_006273.1 + 129621 0.66 0.998564
Target:  5'- cCGUGCACGUUcgcgccuGCAACcu-CACCCa -3'
miRNA:   3'- uGCAUGUGCAAcc-----CGUUGcuuGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 135392 0.66 0.998564
Target:  5'- cGCGUgcacgcgcugcuuucGCACGcaccugugugaucUGGGCAGCGGcugcGCGCUCg -3'
miRNA:   3'- -UGCA---------------UGUGCa------------ACCCGUUGCU----UGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 186060 0.66 0.998564
Target:  5'- uCGUcCGCGc-GGGCGGC-AGCAUCCa -3'
miRNA:   3'- uGCAuGUGCaaCCCGUUGcUUGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 94498 0.66 0.998564
Target:  5'- -gGUGCGCGacGaGGCcggccaGGCGGGCACCUc -3'
miRNA:   3'- ugCAUGUGCaaC-CCG------UUGCUUGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 15036 0.66 0.998564
Target:  5'- uGCccGCACGccccgGGGCGugcCGAGCugCCu -3'
miRNA:   3'- -UGcaUGUGCaa---CCCGUu--GCUUGugGG- -5'
29962 5' -51.2 NC_006273.1 + 30148 0.66 0.998564
Target:  5'- cAUGUGaCGCGccgagucagUGGGCGAgccCGGGgGCCCg -3'
miRNA:   3'- -UGCAU-GUGCa--------ACCCGUU---GCUUgUGGG- -5'
29962 5' -51.2 NC_006273.1 + 48949 0.66 0.998564
Target:  5'- uGCGUcauCACGUUucGaGGCAGCGAcaGCUCg -3'
miRNA:   3'- -UGCAu--GUGCAA--C-CCGUUGCUugUGGG- -5'
29962 5' -51.2 NC_006273.1 + 74632 0.66 0.998564
Target:  5'- cCGUGCACGUacuUGaggaaGGCGGCGuACuucugACCCg -3'
miRNA:   3'- uGCAUGUGCA---AC-----CCGUUGCuUG-----UGGG- -5'
29962 5' -51.2 NC_006273.1 + 102398 0.66 0.998564
Target:  5'- -gGUAgGCGUcGGGCAcgAUGAACAgCg -3'
miRNA:   3'- ugCAUgUGCAaCCCGU--UGCUUGUgGg -5'
29962 5' -51.2 NC_006273.1 + 94711 0.66 0.998538
Target:  5'- uCGUucCGCGgUGGGCGAcCGGGgauccccCACCCa -3'
miRNA:   3'- uGCAu-GUGCaACCCGUU-GCUU-------GUGGG- -5'
29962 5' -51.2 NC_006273.1 + 126110 0.66 0.9984
Target:  5'- -gGUACACGUUcauagGGaagacGCGaaagagguccugcacGCGGACGCCCa -3'
miRNA:   3'- ugCAUGUGCAA-----CC-----CGU---------------UGCUUGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 99090 0.66 0.9984
Target:  5'- aGCGUcuGCGCGccugagagccgauuaUcgGGGCAGCGcAgACCCa -3'
miRNA:   3'- -UGCA--UGUGC---------------Aa-CCCGUUGCuUgUGGG- -5'
29962 5' -51.2 NC_006273.1 + 80418 0.66 0.998283
Target:  5'- aGCGaacuCACGUcGGGCAgcucaACGcGCGCCa -3'
miRNA:   3'- -UGCau--GUGCAaCCCGU-----UGCuUGUGGg -5'
29962 5' -51.2 NC_006273.1 + 78667 0.66 0.998283
Target:  5'- cGCGcACGCGagaagGGGCcgggguccGCGGGCACCg -3'
miRNA:   3'- -UGCaUGUGCaa---CCCGu-------UGCUUGUGGg -5'
29962 5' -51.2 NC_006273.1 + 192058 0.66 0.998283
Target:  5'- cGCGgGCGCaGUccgGGGCGACG-ACGCUUc -3'
miRNA:   3'- -UGCaUGUG-CAa--CCCGUUGCuUGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 49677 0.66 0.998283
Target:  5'- aGCGUGgACGacUGGGCGAC---CACCUc -3'
miRNA:   3'- -UGCAUgUGCa-ACCCGUUGcuuGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 190063 0.66 0.998283
Target:  5'- -----gACGgcgGGGgGACGAACACCg -3'
miRNA:   3'- ugcaugUGCaa-CCCgUUGCUUGUGGg -5'
29962 5' -51.2 NC_006273.1 + 63010 0.66 0.998283
Target:  5'- ---aGCACGUcUGGaGCAACGuGACACUg -3'
miRNA:   3'- ugcaUGUGCA-ACC-CGUUGC-UUGUGGg -5'
29962 5' -51.2 NC_006273.1 + 178326 0.66 0.998283
Target:  5'- gACGUucucaggauCAUGUUucaugcgcucgcGGGCcGCGGACGCCUc -3'
miRNA:   3'- -UGCAu--------GUGCAA------------CCCGuUGCUUGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 83653 0.66 0.998283
Target:  5'- cCGUGCGCaagGcGcGCGACGcGGCGCCCu -3'
miRNA:   3'- uGCAUGUGcaaC-C-CGUUGC-UUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.