miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29962 5' -51.2 NC_006273.1 + 2371 0.73 0.911248
Target:  5'- gGCGUGCugGgcgcgcuggcgcugGGGC-GCGAgucgGCGCCCg -3'
miRNA:   3'- -UGCAUGugCaa------------CCCGuUGCU----UGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 4208 0.77 0.740784
Target:  5'- cGCGacagGCGCGUcgaggGGGCAG-GAACACCCu -3'
miRNA:   3'- -UGCa---UGUGCAa----CCCGUUgCUUGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 7881 0.68 0.993004
Target:  5'- gGCGUgacgaaGCugGUacgGuGGCGGCGGACugUCa -3'
miRNA:   3'- -UGCA------UGugCAa--C-CCGUUGCUUGugGG- -5'
29962 5' -51.2 NC_006273.1 + 8257 0.66 0.997957
Target:  5'- gACGagaGC-CGguaGGGCAGCGGcgcAUACCCa -3'
miRNA:   3'- -UGCa--UGuGCaa-CCCGUUGCU---UGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 8873 0.67 0.997147
Target:  5'- uUGUGCcCGgaccgUGGGCGcgACGAA-ACCCa -3'
miRNA:   3'- uGCAUGuGCa----ACCCGU--UGCUUgUGGG- -5'
29962 5' -51.2 NC_006273.1 + 13605 0.66 0.998564
Target:  5'- cCGUGCugGa-GGGCcGCcccACGCCCa -3'
miRNA:   3'- uGCAUGugCaaCCCGuUGcu-UGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 14008 0.67 0.995448
Target:  5'- gGCGgGCGCGgggUGGcggaGCGGgGAGCGCCg -3'
miRNA:   3'- -UGCaUGUGCa--ACC----CGUUgCUUGUGGg -5'
29962 5' -51.2 NC_006273.1 + 15036 0.66 0.998564
Target:  5'- uGCccGCACGccccgGGGCGugcCGAGCugCCu -3'
miRNA:   3'- -UGcaUGUGCaa---CCCGUu--GCUUGugGG- -5'
29962 5' -51.2 NC_006273.1 + 15915 0.74 0.863246
Target:  5'- gGCGUACACGcUGGGaaGACGgAGCuCCCa -3'
miRNA:   3'- -UGCAUGUGCaACCCg-UUGC-UUGuGGG- -5'
29962 5' -51.2 NC_006273.1 + 16460 0.69 0.981242
Target:  5'- cCG-ACGCGUUGGccgccuGCGuugGCGAACACCa -3'
miRNA:   3'- uGCaUGUGCAACC------CGU---UGCUUGUGGg -5'
29962 5' -51.2 NC_006273.1 + 16927 0.66 0.99758
Target:  5'- uGCGUACACa-UGGGCGAgGcGGCGCg- -3'
miRNA:   3'- -UGCAUGUGcaACCCGUUgC-UUGUGgg -5'
29962 5' -51.2 NC_006273.1 + 19220 0.68 0.990739
Target:  5'- cACGUAgaacauCACGUUGGuuuugaagccacaGCAGCGGaaACACCg -3'
miRNA:   3'- -UGCAU------GUGCAACC-------------CGUUGCU--UGUGGg -5'
29962 5' -51.2 NC_006273.1 + 20572 0.67 0.994726
Target:  5'- gGCGUcGCACG-UGGGUucCGGGacagaACCCg -3'
miRNA:   3'- -UGCA-UGUGCaACCCGuuGCUUg----UGGG- -5'
29962 5' -51.2 NC_006273.1 + 20773 1.12 0.00919
Target:  5'- cACGUACACGUUGGGCAACGAACACCCu -3'
miRNA:   3'- -UGCAUGUGCAACCCGUUGCUUGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 21625 0.74 0.891678
Target:  5'- uGCGUGC----UGGGCAACGAG-ACCCa -3'
miRNA:   3'- -UGCAUGugcaACCCGUUGCUUgUGGG- -5'
29962 5' -51.2 NC_006273.1 + 27738 0.68 0.990859
Target:  5'- uACGgcACGCGUUacauccGCGACGAACugCCg -3'
miRNA:   3'- -UGCa-UGUGCAAcc----CGUUGCUUGugGG- -5'
29962 5' -51.2 NC_006273.1 + 29254 0.66 0.999011
Target:  5'- -gGUGCugACGUccuuugGGGCAGuCGGGCACgCg -3'
miRNA:   3'- ugCAUG--UGCAa-----CCCGUU-GCUUGUGgG- -5'
29962 5' -51.2 NC_006273.1 + 30148 0.66 0.998564
Target:  5'- cAUGUGaCGCGccgagucagUGGGCGAgccCGGGgGCCCg -3'
miRNA:   3'- -UGCAU-GUGCa--------ACCCGUU---GCUUgUGGG- -5'
29962 5' -51.2 NC_006273.1 + 30488 0.66 0.999011
Target:  5'- cACGaGCACGc-GGGCG-CGcAGCGCCa -3'
miRNA:   3'- -UGCaUGUGCaaCCCGUuGC-UUGUGGg -5'
29962 5' -51.2 NC_006273.1 + 30674 0.69 0.983224
Target:  5'- aGCGgGCGCGccucgGGGCucgccGGCGA-CACCCa -3'
miRNA:   3'- -UGCaUGUGCaa---CCCG-----UUGCUuGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.