miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29962 5' -51.2 NC_006273.1 + 233076 0.69 0.985043
Target:  5'- -gGUACACGUgcccguccagcGGGCAGuaccCGAacacgGCGCCCa -3'
miRNA:   3'- ugCAUGUGCAa----------CCCGUU----GCU-----UGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 126532 0.71 0.950918
Target:  5'- uCGUGCGCGaaggcugUGGGUAGCGGGaaacCACCg -3'
miRNA:   3'- uGCAUGUGCa------ACCCGUUGCUU----GUGGg -5'
29962 5' -51.2 NC_006273.1 + 106263 0.71 0.95866
Target:  5'- aACGguguuCGUUGGGCGGCGGcaaguucaugaGCugCCa -3'
miRNA:   3'- -UGCaugu-GCAACCCGUUGCU-----------UGugGG- -5'
29962 5' -51.2 NC_006273.1 + 222680 0.71 0.95866
Target:  5'- gGCGUgaaagACGcCGgaGGGUAGCGAcucgcccaccACACCCa -3'
miRNA:   3'- -UGCA-----UGU-GCaaCCCGUUGCU----------UGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 122228 0.71 0.95866
Target:  5'- cGCGUACGgGUguaGGCGACuGAgcggcGCGCCCu -3'
miRNA:   3'- -UGCAUGUgCAac-CCGUUG-CU-----UGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 52048 0.7 0.971538
Target:  5'- gGCGaACACGUcccacuUGGGCGucAUGAACAacaCCa -3'
miRNA:   3'- -UGCaUGUGCA------ACCCGU--UGCUUGUg--GG- -5'
29962 5' -51.2 NC_006273.1 + 182364 0.7 0.971538
Target:  5'- uACGUGC-CGUUgGGGCAAgGggUACa- -3'
miRNA:   3'- -UGCAUGuGCAA-CCCGUUgCuuGUGgg -5'
29962 5' -51.2 NC_006273.1 + 152512 0.69 0.981035
Target:  5'- cGCGUaccucggGCGCGUUGGcuauGCGcACG-GCGCCCa -3'
miRNA:   3'- -UGCA-------UGUGCAACC----CGU-UGCuUGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 30674 0.69 0.983224
Target:  5'- aGCGgGCGCGccucgGGGCucgccGGCGA-CACCCa -3'
miRNA:   3'- -UGCaUGUGCaa---CCCG-----UUGCUuGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 167280 0.71 0.950507
Target:  5'- gGCGgGCAUGacgggguUUGcGGCGACGGGCACuCCg -3'
miRNA:   3'- -UGCaUGUGC-------AAC-CCGUUGCUUGUG-GG- -5'
29962 5' -51.2 NC_006273.1 + 146152 0.72 0.942262
Target:  5'- cGCGUACGauucgcgaGUcGGGaAugGGACACCCg -3'
miRNA:   3'- -UGCAUGUg-------CAaCCCgUugCUUGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 149386 0.72 0.942262
Target:  5'- gGCGUGCuguUGgucugGGGCGACGAGCGguugguggguCCCu -3'
miRNA:   3'- -UGCAUGu--GCaa---CCCGUUGCUUGU----------GGG- -5'
29962 5' -51.2 NC_006273.1 + 192548 0.75 0.823119
Target:  5'- gACGUgugAC-CGUUGGGCAACGGaacggcguuucACugCCa -3'
miRNA:   3'- -UGCA---UGuGCAACCCGUUGCU-----------UGugGG- -5'
29962 5' -51.2 NC_006273.1 + 103271 0.74 0.870677
Target:  5'- gUGUACGCGguagacGGGCAGCGGuCGCuCCa -3'
miRNA:   3'- uGCAUGUGCaa----CCCGUUGCUuGUG-GG- -5'
29962 5' -51.2 NC_006273.1 + 21625 0.74 0.891678
Target:  5'- uGCGUGC----UGGGCAACGAG-ACCCa -3'
miRNA:   3'- -UGCAUGugcaACCCGUUGCUUgUGGG- -5'
29962 5' -51.2 NC_006273.1 + 141333 0.73 0.898233
Target:  5'- uGCGUggccGCACaccuGUUGGaGCAACGGGCGgCCg -3'
miRNA:   3'- -UGCA----UGUG----CAACC-CGUUGCUUGUgGG- -5'
29962 5' -51.2 NC_006273.1 + 144642 0.73 0.910652
Target:  5'- gGCGUGCucaaGcaGGGCAGCGGucGCACCUu -3'
miRNA:   3'- -UGCAUGug--CaaCCCGUUGCU--UGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 197264 0.73 0.911248
Target:  5'- gGCGUGCugGgcgcgcuggcgcugGGGC-GCGAgucgGCGCCCg -3'
miRNA:   3'- -UGCAUGugCaa------------CCCGuUGCU----UGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 101563 0.72 0.942262
Target:  5'- cCGUGCGCGacGGGCGcgGCGuucGCGCUCg -3'
miRNA:   3'- uGCAUGUGCaaCCCGU--UGCu--UGUGGG- -5'
29962 5' -51.2 NC_006273.1 + 120604 0.72 0.942262
Target:  5'- gACGUuuGgGUUGcGCAGCGGGCugCCa -3'
miRNA:   3'- -UGCAugUgCAACcCGUUGCUUGugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.