miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29964 3' -59.6 NC_006273.1 + 82379 0.66 0.87098
Target:  5'- uUCUGGggACGuGuCGCGGCCa--GAGCAu -3'
miRNA:   3'- -GGACCaaUGU-C-GCGCCGGccgCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 232968 0.66 0.87098
Target:  5'- --cGGgcaGCAgccgccGCGCGGCCucggcGGCGGGCGc -3'
miRNA:   3'- ggaCCaa-UGU------CGCGCCGG-----CCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 167186 0.66 0.87098
Target:  5'- --cGGgcGCAGCGgccgcggaGGCCGGCGuaaacAGCGu -3'
miRNA:   3'- ggaCCaaUGUCGCg-------CCGGCCGC-----UCGU- -5'
29964 3' -59.6 NC_006273.1 + 73858 0.66 0.87098
Target:  5'- cCCgccGUUcGCgugAGCGCGGCCGacauGCGGGCGc -3'
miRNA:   3'- -GGac-CAA-UG---UCGCGCCGGC----CGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 73736 0.66 0.87098
Target:  5'- gCCaUGGgugGCGGCgGCGGCCgaGGCccGGCAg -3'
miRNA:   3'- -GG-ACCaa-UGUCG-CGCCGG--CCGc-UCGU- -5'
29964 3' -59.6 NC_006273.1 + 38075 0.66 0.87098
Target:  5'- --cGGgcaGCAgccgccGCGCGGCCucggcGGCGGGCGc -3'
miRNA:   3'- ggaCCaa-UGU------CGCGCCGG-----CCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 189313 0.66 0.863917
Target:  5'- aCCgcGGcaccUGCGGCGuCGGCgGGUGGGUg -3'
miRNA:   3'- -GGa-CCa---AUGUCGC-GCCGgCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 193811 0.66 0.863917
Target:  5'- --aGGcUAUGGCGCGGC-GGCGAcaGCGc -3'
miRNA:   3'- ggaCCaAUGUCGCGCCGgCCGCU--CGU- -5'
29964 3' -59.6 NC_006273.1 + 195817 0.66 0.863917
Target:  5'- cCCUcGGUcgcgGCcGCGgGGCCGGaGGGCc -3'
miRNA:   3'- -GGA-CCAa---UGuCGCgCCGGCCgCUCGu -5'
29964 3' -59.6 NC_006273.1 + 64826 0.66 0.863917
Target:  5'- gCCUGGagucGCGGUuCGGCCGGacCGuGCAc -3'
miRNA:   3'- -GGACCaa--UGUCGcGCCGGCC--GCuCGU- -5'
29964 3' -59.6 NC_006273.1 + 925 0.66 0.863917
Target:  5'- cCCUcGGUcgcgGCcGCGgGGCCGGaGGGCc -3'
miRNA:   3'- -GGA-CCAa---UGuCGCgCCGGCCgCUCGu -5'
29964 3' -59.6 NC_006273.1 + 176812 0.66 0.863917
Target:  5'- gCUGcacauCGGCGUGGCUGGCuuGCAc -3'
miRNA:   3'- gGACcaau-GUCGCGCCGGCCGcuCGU- -5'
29964 3' -59.6 NC_006273.1 + 64071 0.66 0.856665
Target:  5'- gCUGaGcUGCGGCcaucagagcaGCGGCgGgGCGAGCAc -3'
miRNA:   3'- gGAC-CaAUGUCG----------CGCCGgC-CGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 23426 0.66 0.856665
Target:  5'- --gGGUcUACAGCaccGUGGCCGuGCaGGGCAc -3'
miRNA:   3'- ggaCCA-AUGUCG---CGCCGGC-CG-CUCGU- -5'
29964 3' -59.6 NC_006273.1 + 204695 0.66 0.849231
Target:  5'- gCC-GGccUugGGUGUcGCCGGCGAGCc -3'
miRNA:   3'- -GGaCCa-AugUCGCGcCGGCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 233053 0.66 0.849231
Target:  5'- --cGGUgaaGCAGCGUGGC-GGCGAaagacGCGa -3'
miRNA:   3'- ggaCCAa--UGUCGCGCCGgCCGCU-----CGU- -5'
29964 3' -59.6 NC_006273.1 + 72660 0.66 0.84162
Target:  5'- gCUUGGcgcguagUAguGCuaGGCaCGGCGAGCu -3'
miRNA:   3'- -GGACCa------AUguCGcgCCG-GCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 82829 0.66 0.84162
Target:  5'- aCCUGGgcuacugcUGCAG-GUGGCCGaGCGccugGGCGc -3'
miRNA:   3'- -GGACCa-------AUGUCgCGCCGGC-CGC----UCGU- -5'
29964 3' -59.6 NC_006273.1 + 169807 0.66 0.84162
Target:  5'- gUUGGUaGCGGCccagGGCCGGCaGGGCc -3'
miRNA:   3'- gGACCAaUGUCGcg--CCGGCCG-CUCGu -5'
29964 3' -59.6 NC_006273.1 + 160116 0.66 0.833838
Target:  5'- aCCUGGUaugagGCGGCcgccGCGGC-GGCcAGCGc -3'
miRNA:   3'- -GGACCAa----UGUCG----CGCCGgCCGcUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.