Results 21 - 40 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29964 | 3' | -59.6 | NC_006273.1 | + | 14981 | 0.67 | 0.825891 |
Target: 5'- aCCgGGUUACGGCacggugauuauGCGGCugaugaaaaCGGUGcAGCAg -3' miRNA: 3'- -GGaCCAAUGUCG-----------CGCCG---------GCCGC-UCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 198172 | 0.67 | 0.817786 |
Target: 5'- gCCUGGgcACGcGCGuCGGCC-GCGucGCAa -3' miRNA: 3'- -GGACCaaUGU-CGC-GCCGGcCGCu-CGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 190127 | 0.67 | 0.809529 |
Target: 5'- gCU-GUUGCGGCGCGagcaGCCGcCGGGCGg -3' miRNA: 3'- gGAcCAAUGUCGCGC----CGGCcGCUCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 66760 | 0.67 | 0.817786 |
Target: 5'- gCUGGUgcgcgacccggGCAGcCGCGGCuCGGCGcugacacuGGCc -3' miRNA: 3'- gGACCAa----------UGUC-GCGCCG-GCCGC--------UCGu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 105067 | 0.67 | 0.804505 |
Target: 5'- gCCUGGUggACauggacugugagaaaAGCGCguacaugcucgaGGCCGGCGcGGCu -3' miRNA: 3'- -GGACCAa-UG---------------UCGCG------------CCGGCCGC-UCGu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 17395 | 0.67 | 0.80028 |
Target: 5'- --cGGUUGCcGCGCGuauggccGCCGGCcacgaGAGCGa -3' miRNA: 3'- ggaCCAAUGuCGCGC-------CGGCCG-----CUCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 93568 | 0.67 | 0.801128 |
Target: 5'- gCCUGGgcaacuugaGCGGCgGCGGCCuGCGcGGCc -3' miRNA: 3'- -GGACCaa-------UGUCG-CGCCGGcCGC-UCGu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 170608 | 0.67 | 0.801128 |
Target: 5'- gUCUGuagaccgGCAGcCGCccGCCGGCGGGCAg -3' miRNA: 3'- -GGACcaa----UGUC-GCGc-CGGCCGCUCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 167324 | 0.67 | 0.801128 |
Target: 5'- --cGGcgGCAGCgGCGGCCacGGCG-GCGc -3' miRNA: 3'- ggaCCaaUGUCG-CGCCGG--CCGCuCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 133124 | 0.67 | 0.78392 |
Target: 5'- gCUGGagcACuGCGUggGGCUGGCGGGUg -3' miRNA: 3'- gGACCaa-UGuCGCG--CCGGCCGCUCGu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 210663 | 0.67 | 0.792589 |
Target: 5'- gCCgGGaugu-GCGCcaggaGGCCGGCGAGUAa -3' miRNA: 3'- -GGaCCaauguCGCG-----CCGGCCGCUCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 124421 | 0.67 | 0.801128 |
Target: 5'- --cGGgcgACAcguGCuGCGGCCGcGCGGGCGu -3' miRNA: 3'- ggaCCaa-UGU---CG-CGCCGGC-CGCUCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 204199 | 0.67 | 0.801128 |
Target: 5'- gCCUGG--AC-GC-CGGCCGGCaaugGAGCAc -3' miRNA: 3'- -GGACCaaUGuCGcGCCGGCCG----CUCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 25453 | 0.67 | 0.790002 |
Target: 5'- gCCgugGGUUgGCAGC-UGGCCGGCuugaccgcguuguuGAGCGc -3' miRNA: 3'- -GGa--CCAA-UGUCGcGCCGGCCG--------------CUCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 161787 | 0.68 | 0.729605 |
Target: 5'- --aGGgaagGCGGCaGCGGCagCGGCGGGCc -3' miRNA: 3'- ggaCCaa--UGUCG-CGCCG--GCCGCUCGu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 158232 | 0.68 | 0.748097 |
Target: 5'- --cGGgcGC-GCGuCGGCCGGCGAcgGCGg -3' miRNA: 3'- ggaCCaaUGuCGC-GCCGGCCGCU--CGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 109320 | 0.68 | 0.738892 |
Target: 5'- gCUGGauccgGCA-CGCGGCCGGCGuAGa- -3' miRNA: 3'- gGACCaa---UGUcGCGCCGGCCGC-UCgu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 116210 | 0.68 | 0.775129 |
Target: 5'- cCCaGG-UGCAGCuGCGcGCCGGUcucuuuccacgGAGCAa -3' miRNA: 3'- -GGaCCaAUGUCG-CGC-CGGCCG-----------CUCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 110926 | 0.68 | 0.775129 |
Target: 5'- gCUGGaccGCgAGCGCaGcGUCGGCGAGCc -3' miRNA: 3'- gGACCaa-UG-UCGCG-C-CGGCCGCUCGu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 21554 | 0.68 | 0.775129 |
Target: 5'- --aGGacgGCGGCGCGGCgcagCGGCuGAGCc -3' miRNA: 3'- ggaCCaa-UGUCGCGCCG----GCCG-CUCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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