Results 21 - 40 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29964 | 3' | -59.6 | NC_006273.1 | + | 99766 | 0.69 | 0.701318 |
Target: 5'- uCUUGGaucacguCGGCGUaacGGCCGGCGuGCGu -3' miRNA: 3'- -GGACCaau----GUCGCG---CCGGCCGCuCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 230857 | 0.69 | 0.720241 |
Target: 5'- uCCUGGggaACGGgucgGCGGCCGGUcGGCu -3' miRNA: 3'- -GGACCaa-UGUCg---CGCCGGCCGcUCGu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 56427 | 0.69 | 0.67256 |
Target: 5'- aCCUGGUgucGCGGCGuCGGUagaGGCuuGCGg -3' miRNA: 3'- -GGACCAa--UGUCGC-GCCGg--CCGcuCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 114511 | 0.69 | 0.691774 |
Target: 5'- uCCUcGGcgACGGCGU-GCaCGGCGGGCGu -3' miRNA: 3'- -GGA-CCaaUGUCGCGcCG-GCCGCUCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 153614 | 0.69 | 0.701318 |
Target: 5'- --cGGUcGCGG-GUGGCCGGCGucAGCGu -3' miRNA: 3'- ggaCCAaUGUCgCGCCGGCCGC--UCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 118624 | 0.69 | 0.720241 |
Target: 5'- gCUGG--AgAGCGagaGGCCGGCGuAGCu -3' miRNA: 3'- gGACCaaUgUCGCg--CCGGCCGC-UCGu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 155553 | 0.69 | 0.67256 |
Target: 5'- cCCgaGGUggUGCAGCGCGGCCuuucGCG-GCu -3' miRNA: 3'- -GGa-CCA--AUGUCGCGCCGGc---CGCuCGu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 145310 | 0.69 | 0.701318 |
Target: 5'- aCCUGGUgggcUGCGccGCGgGGCUGuGCGAGg- -3' miRNA: 3'- -GGACCA----AUGU--CGCgCCGGC-CGCUCgu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 167238 | 0.69 | 0.676414 |
Target: 5'- gCUGGUaaggucgaucauggGCGGCGUGGUgaccguggcggUGGCGGGCAu -3' miRNA: 3'- gGACCAa-------------UGUCGCGCCG-----------GCCGCUCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 105446 | 0.69 | 0.701318 |
Target: 5'- aCgUGGUaggACAGCGCGcGCCcGGCGGuCAc -3' miRNA: 3'- -GgACCAa--UGUCGCGC-CGG-CCGCUcGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 138158 | 0.69 | 0.720241 |
Target: 5'- -aUGGcgGCGGCcaCGGCCuGCGGGCAg -3' miRNA: 3'- ggACCaaUGUCGc-GCCGGcCGCUCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 170819 | 0.69 | 0.686026 |
Target: 5'- cCCUGGUggcagcugGCcugugugacuuucauGGCGaGGCCGGCG-GCAg -3' miRNA: 3'- -GGACCAa-------UG---------------UCGCgCCGGCCGCuCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 144309 | 0.69 | 0.71081 |
Target: 5'- aUCUGGcgGCGuuguGCGCGG-CGGUGGGCu -3' miRNA: 3'- -GGACCaaUGU----CGCGCCgGCCGCUCGu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 61256 | 0.68 | 0.748097 |
Target: 5'- cCCaGGUccagccacUGCAGCGCGGCgCGcGCG-GCc -3' miRNA: 3'- -GGaCCA--------AUGUCGCGCCG-GC-CGCuCGu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 113524 | 0.68 | 0.775129 |
Target: 5'- cCCgGGggGC-GCGCGGgCGGCGAa-- -3' miRNA: 3'- -GGaCCaaUGuCGCGCCgGCCGCUcgu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 116852 | 0.68 | 0.75721 |
Target: 5'- aCgUGGcuuugUGCAGCGUgGGUCGGCGucGCGg -3' miRNA: 3'- -GgACCa----AUGUCGCG-CCGGCCGCu-CGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 161873 | 0.68 | 0.766223 |
Target: 5'- gUCUGGUcaACuGCGUGGaCGGCGAugGCAa -3' miRNA: 3'- -GGACCAa-UGuCGCGCCgGCCGCU--CGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 21554 | 0.68 | 0.775129 |
Target: 5'- --aGGacgGCGGCGCGGCgcagCGGCuGAGCc -3' miRNA: 3'- ggaCCaa-UGUCGCGCCG----GCCG-CUCGu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 161787 | 0.68 | 0.729605 |
Target: 5'- --aGGgaagGCGGCaGCGGCagCGGCGGGCc -3' miRNA: 3'- ggaCCaa--UGUCG-CGCCG--GCCGCUCGu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 69314 | 0.68 | 0.736115 |
Target: 5'- -gUGGUagacgucuucggcaUGCGGCaaaucgucacGCaGGCCGGCGAGCc -3' miRNA: 3'- ggACCA--------------AUGUCG----------CG-CCGGCCGCUCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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