miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29964 3' -59.6 NC_006273.1 + 19410 1.1 0.001988
Target:  5'- gCCUGGUUACAGCGCGGCCGGCGAGCAa -3'
miRNA:   3'- -GGACCAAUGUCGCGCCGGCCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 202544 0.8 0.186517
Target:  5'- gUUGGgaccGCAGCGUGGCCGGCGuGGCGg -3'
miRNA:   3'- gGACCaa--UGUCGCGCCGGCCGC-UCGU- -5'
29964 3' -59.6 NC_006273.1 + 140720 0.75 0.358247
Target:  5'- -gUGGUggcgGCGGCGgGGCCGGCGcuuguGCGg -3'
miRNA:   3'- ggACCAa---UGUCGCgCCGGCCGCu----CGU- -5'
29964 3' -59.6 NC_006273.1 + 1957 0.75 0.397143
Target:  5'- gCUGGguugcGCGGCGgGGCCGGCGA-CGg -3'
miRNA:   3'- gGACCaa---UGUCGCgCCGGCCGCUcGU- -5'
29964 3' -59.6 NC_006273.1 + 196849 0.75 0.397143
Target:  5'- gCUGGguugcGCGGCGgGGCCGGCGA-CGg -3'
miRNA:   3'- gGACCaa---UGUCGCgCCGGCCGCUcGU- -5'
29964 3' -59.6 NC_006273.1 + 63166 0.74 0.421747
Target:  5'- cCUUGcGUccgucucGCGGCGCGGCCGGCGcGGCc -3'
miRNA:   3'- -GGAC-CAa------UGUCGCGCCGGCCGC-UCGu -5'
29964 3' -59.6 NC_006273.1 + 16112 0.73 0.491561
Target:  5'- aCUGGUuccUGCAGgUGCGGCCcGGC-AGCAc -3'
miRNA:   3'- gGACCA---AUGUC-GCGCCGG-CCGcUCGU- -5'
29964 3' -59.6 NC_006273.1 + 27051 0.72 0.528421
Target:  5'- ------aGCGGCGCaagGGCCGGCGAGCc -3'
miRNA:   3'- ggaccaaUGUCGCG---CCGGCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 229131 0.72 0.528421
Target:  5'- gCUGGUUGUuuCGCcGCCGGCGAGCu -3'
miRNA:   3'- gGACCAAUGucGCGcCGGCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 211178 0.72 0.5378
Target:  5'- aUUGGUggagACGGC-CGGCgCGGCGGGUg -3'
miRNA:   3'- gGACCAa---UGUCGcGCCG-GCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 142766 0.72 0.547236
Target:  5'- gCCUGauccGCAcGCGCGccGCUGGCGAGCAa -3'
miRNA:   3'- -GGACcaa-UGU-CGCGC--CGGCCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 216372 0.71 0.556723
Target:  5'- uUCUGGUugucuUGCAGCGC-GCCcGUGGGCAg -3'
miRNA:   3'- -GGACCA-----AUGUCGCGcCGGcCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 226113 0.7 0.629953
Target:  5'- gCCUGGUaaccagaguacgugUACgguccucgcagguGGCGCGGUaguUGGCGAGCu -3'
miRNA:   3'- -GGACCA--------------AUG-------------UCGCGCCG---GCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 45874 0.7 0.633834
Target:  5'- cCCUGGaacucucacACAGCGCGGC-GGcCGGGCc -3'
miRNA:   3'- -GGACCaa-------UGUCGCGCCGgCC-GCUCGu -5'
29964 3' -59.6 NC_006273.1 + 72615 0.7 0.643535
Target:  5'- aCUGGUUACGGUGguauaCGGCCaaaucagcGCGGGCGu -3'
miRNA:   3'- gGACCAAUGUCGC-----GCCGGc-------CGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 159795 0.7 0.643535
Target:  5'- --aGGUUACAGCGCgugucgauGGCCagcGGCGcGCAc -3'
miRNA:   3'- ggaCCAAUGUCGCG--------CCGG---CCGCuCGU- -5'
29964 3' -59.6 NC_006273.1 + 147568 0.7 0.653228
Target:  5'- --cGGgaGCAGCGgGGgCGGCGggGGCAg -3'
miRNA:   3'- ggaCCaaUGUCGCgCCgGCCGC--UCGU- -5'
29964 3' -59.6 NC_006273.1 + 185288 0.7 0.653228
Target:  5'- gCUGGaga-AGCGCaGcGUCGGCGAGCGa -3'
miRNA:   3'- gGACCaaugUCGCG-C-CGGCCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 111330 0.7 0.653228
Target:  5'- gCCUGGccgcAUAGCGCGGCCGcGCcgcuGGGUu -3'
miRNA:   3'- -GGACCaa--UGUCGCGCCGGC-CG----CUCGu -5'
29964 3' -59.6 NC_006273.1 + 144190 0.7 0.662905
Target:  5'- cCCUGGa-GC-GCGUGGCCGaGCGGuGCGa -3'
miRNA:   3'- -GGACCaaUGuCGCGCCGGC-CGCU-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.