miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29964 3' -59.6 NC_006273.1 + 14981 0.67 0.825891
Target:  5'- aCCgGGUUACGGCacggugauuauGCGGCugaugaaaaCGGUGcAGCAg -3'
miRNA:   3'- -GGaCCAAUGUCG-----------CGCCG---------GCCGC-UCGU- -5'
29964 3' -59.6 NC_006273.1 + 198172 0.67 0.817786
Target:  5'- gCCUGGgcACGcGCGuCGGCC-GCGucGCAa -3'
miRNA:   3'- -GGACCaaUGU-CGC-GCCGGcCGCu-CGU- -5'
29964 3' -59.6 NC_006273.1 + 66760 0.67 0.817786
Target:  5'- gCUGGUgcgcgacccggGCAGcCGCGGCuCGGCGcugacacuGGCc -3'
miRNA:   3'- gGACCAa----------UGUC-GCGCCG-GCCGC--------UCGu -5'
29964 3' -59.6 NC_006273.1 + 190127 0.67 0.809529
Target:  5'- gCU-GUUGCGGCGCGagcaGCCGcCGGGCGg -3'
miRNA:   3'- gGAcCAAUGUCGCGC----CGGCcGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 105067 0.67 0.804505
Target:  5'- gCCUGGUggACauggacugugagaaaAGCGCguacaugcucgaGGCCGGCGcGGCu -3'
miRNA:   3'- -GGACCAa-UG---------------UCGCG------------CCGGCCGC-UCGu -5'
29964 3' -59.6 NC_006273.1 + 170608 0.67 0.801128
Target:  5'- gUCUGuagaccgGCAGcCGCccGCCGGCGGGCAg -3'
miRNA:   3'- -GGACcaa----UGUC-GCGc-CGGCCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 204199 0.67 0.801128
Target:  5'- gCCUGG--AC-GC-CGGCCGGCaaugGAGCAc -3'
miRNA:   3'- -GGACCaaUGuCGcGCCGGCCG----CUCGU- -5'
29964 3' -59.6 NC_006273.1 + 124421 0.67 0.801128
Target:  5'- --cGGgcgACAcguGCuGCGGCCGcGCGGGCGu -3'
miRNA:   3'- ggaCCaa-UGU---CG-CGCCGGC-CGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 167324 0.67 0.801128
Target:  5'- --cGGcgGCAGCgGCGGCCacGGCG-GCGc -3'
miRNA:   3'- ggaCCaaUGUCG-CGCCGG--CCGCuCGU- -5'
29964 3' -59.6 NC_006273.1 + 93568 0.67 0.801128
Target:  5'- gCCUGGgcaacuugaGCGGCgGCGGCCuGCGcGGCc -3'
miRNA:   3'- -GGACCaa-------UGUCG-CGCCGGcCGC-UCGu -5'
29964 3' -59.6 NC_006273.1 + 17395 0.67 0.80028
Target:  5'- --cGGUUGCcGCGCGuauggccGCCGGCcacgaGAGCGa -3'
miRNA:   3'- ggaCCAAUGuCGCGC-------CGGCCG-----CUCGU- -5'
29964 3' -59.6 NC_006273.1 + 210663 0.67 0.792589
Target:  5'- gCCgGGaugu-GCGCcaggaGGCCGGCGAGUAa -3'
miRNA:   3'- -GGaCCaauguCGCG-----CCGGCCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 25453 0.67 0.790002
Target:  5'- gCCgugGGUUgGCAGC-UGGCCGGCuugaccgcguuguuGAGCGc -3'
miRNA:   3'- -GGa--CCAA-UGUCGcGCCGGCCG--------------CUCGU- -5'
29964 3' -59.6 NC_006273.1 + 133124 0.67 0.78392
Target:  5'- gCUGGagcACuGCGUggGGCUGGCGGGUg -3'
miRNA:   3'- gGACCaa-UGuCGCG--CCGGCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 110926 0.68 0.775129
Target:  5'- gCUGGaccGCgAGCGCaGcGUCGGCGAGCc -3'
miRNA:   3'- gGACCaa-UG-UCGCG-C-CGGCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 116210 0.68 0.775129
Target:  5'- cCCaGG-UGCAGCuGCGcGCCGGUcucuuuccacgGAGCAa -3'
miRNA:   3'- -GGaCCaAUGUCG-CGC-CGGCCG-----------CUCGU- -5'
29964 3' -59.6 NC_006273.1 + 21554 0.68 0.775129
Target:  5'- --aGGacgGCGGCGCGGCgcagCGGCuGAGCc -3'
miRNA:   3'- ggaCCaa-UGUCGCGCCG----GCCG-CUCGu -5'
29964 3' -59.6 NC_006273.1 + 113524 0.68 0.775129
Target:  5'- cCCgGGggGC-GCGCGGgCGGCGAa-- -3'
miRNA:   3'- -GGaCCaaUGuCGCGCCgGCCGCUcgu -5'
29964 3' -59.6 NC_006273.1 + 199404 0.68 0.775129
Target:  5'- gCCUGGacccACaAGCGCccgaaGCCGcGCGAGCGu -3'
miRNA:   3'- -GGACCaa--UG-UCGCGc----CGGC-CGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 161873 0.68 0.766223
Target:  5'- gUCUGGUcaACuGCGUGGaCGGCGAugGCAa -3'
miRNA:   3'- -GGACCAa-UGuCGCGCCgGCCGCU--CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.