miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29964 3' -59.6 NC_006273.1 + 204318 0.68 0.766223
Target:  5'- gCUGGUg--AGCGCgaaGGCCGGCauGGGUAu -3'
miRNA:   3'- gGACCAaugUCGCG---CCGGCCG--CUCGU- -5'
29964 3' -59.6 NC_006273.1 + 116852 0.68 0.75721
Target:  5'- aCgUGGcuuugUGCAGCGUgGGUCGGCGucGCGg -3'
miRNA:   3'- -GgACCa----AUGUCGCG-CCGGCCGCu-CGU- -5'
29964 3' -59.6 NC_006273.1 + 158232 0.68 0.748097
Target:  5'- --cGGgcGC-GCGuCGGCCGGCGAcgGCGg -3'
miRNA:   3'- ggaCCaaUGuCGC-GCCGGCCGCU--CGU- -5'
29964 3' -59.6 NC_006273.1 + 61256 0.68 0.748097
Target:  5'- cCCaGGUccagccacUGCAGCGCGGCgCGcGCG-GCc -3'
miRNA:   3'- -GGaCCA--------AUGUCGCGCCG-GC-CGCuCGu -5'
29964 3' -59.6 NC_006273.1 + 109320 0.68 0.738892
Target:  5'- gCUGGauccgGCA-CGCGGCCGGCGuAGa- -3'
miRNA:   3'- gGACCaa---UGUcGCGCCGGCCGC-UCgu -5'
29964 3' -59.6 NC_006273.1 + 69314 0.68 0.736115
Target:  5'- -gUGGUagacgucuucggcaUGCGGCaaaucgucacGCaGGCCGGCGAGCc -3'
miRNA:   3'- ggACCA--------------AUGUCG----------CG-CCGGCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 161787 0.68 0.729605
Target:  5'- --aGGgaagGCGGCaGCGGCagCGGCGGGCc -3'
miRNA:   3'- ggaCCaa--UGUCG-CGCCG--GCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 138158 0.69 0.720241
Target:  5'- -aUGGcgGCGGCcaCGGCCuGCGGGCAg -3'
miRNA:   3'- ggACCaaUGUCGc-GCCGGcCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 230857 0.69 0.720241
Target:  5'- uCCUGGggaACGGgucgGCGGCCGGUcGGCu -3'
miRNA:   3'- -GGACCaa-UGUCg---CGCCGGCCGcUCGu -5'
29964 3' -59.6 NC_006273.1 + 118624 0.69 0.720241
Target:  5'- gCUGG--AgAGCGagaGGCCGGCGuAGCu -3'
miRNA:   3'- gGACCaaUgUCGCg--CCGGCCGC-UCGu -5'
29964 3' -59.6 NC_006273.1 + 144309 0.69 0.71081
Target:  5'- aUCUGGcgGCGuuguGCGCGG-CGGUGGGCu -3'
miRNA:   3'- -GGACCaaUGU----CGCGCCgGCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 145310 0.69 0.701318
Target:  5'- aCCUGGUgggcUGCGccGCGgGGCUGuGCGAGg- -3'
miRNA:   3'- -GGACCA----AUGU--CGCgCCGGC-CGCUCgu -5'
29964 3' -59.6 NC_006273.1 + 105446 0.69 0.701318
Target:  5'- aCgUGGUaggACAGCGCGcGCCcGGCGGuCAc -3'
miRNA:   3'- -GgACCAa--UGUCGCGC-CGG-CCGCUcGU- -5'
29964 3' -59.6 NC_006273.1 + 153614 0.69 0.701318
Target:  5'- --cGGUcGCGG-GUGGCCGGCGucAGCGu -3'
miRNA:   3'- ggaCCAaUGUCgCGCCGGCCGC--UCGU- -5'
29964 3' -59.6 NC_006273.1 + 99766 0.69 0.701318
Target:  5'- uCUUGGaucacguCGGCGUaacGGCCGGCGuGCGu -3'
miRNA:   3'- -GGACCaau----GUCGCG---CCGGCCGCuCGU- -5'
29964 3' -59.6 NC_006273.1 + 114511 0.69 0.691774
Target:  5'- uCCUcGGcgACGGCGU-GCaCGGCGGGCGu -3'
miRNA:   3'- -GGA-CCaaUGUCGCGcCG-GCCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 170819 0.69 0.686026
Target:  5'- cCCUGGUggcagcugGCcugugugacuuucauGGCGaGGCCGGCG-GCAg -3'
miRNA:   3'- -GGACCAa-------UG---------------UCGCgCCGGCCGCuCGU- -5'
29964 3' -59.6 NC_006273.1 + 167238 0.69 0.676414
Target:  5'- gCUGGUaaggucgaucauggGCGGCGUGGUgaccguggcggUGGCGGGCAu -3'
miRNA:   3'- gGACCAa-------------UGUCGCGCCG-----------GCCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 56427 0.69 0.67256
Target:  5'- aCCUGGUgucGCGGCGuCGGUagaGGCuuGCGg -3'
miRNA:   3'- -GGACCAa--UGUCGC-GCCGg--CCGcuCGU- -5'
29964 3' -59.6 NC_006273.1 + 155553 0.69 0.67256
Target:  5'- cCCgaGGUggUGCAGCGCGGCCuuucGCG-GCu -3'
miRNA:   3'- -GGa-CCA--AUGUCGCGCCGGc---CGCuCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.