miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29964 3' -59.6 NC_006273.1 + 925 0.66 0.863917
Target:  5'- cCCUcGGUcgcgGCcGCGgGGCCGGaGGGCc -3'
miRNA:   3'- -GGA-CCAa---UGuCGCgCCGGCCgCUCGu -5'
29964 3' -59.6 NC_006273.1 + 1957 0.75 0.397143
Target:  5'- gCUGGguugcGCGGCGgGGCCGGCGA-CGg -3'
miRNA:   3'- gGACCaa---UGUCGCgCCGGCCGCUcGU- -5'
29964 3' -59.6 NC_006273.1 + 14981 0.67 0.825891
Target:  5'- aCCgGGUUACGGCacggugauuauGCGGCugaugaaaaCGGUGcAGCAg -3'
miRNA:   3'- -GGaCCAAUGUCG-----------CGCCG---------GCCGC-UCGU- -5'
29964 3' -59.6 NC_006273.1 + 16112 0.73 0.491561
Target:  5'- aCUGGUuccUGCAGgUGCGGCCcGGC-AGCAc -3'
miRNA:   3'- gGACCA---AUGUC-GCGCCGG-CCGcUCGU- -5'
29964 3' -59.6 NC_006273.1 + 17395 0.67 0.80028
Target:  5'- --cGGUUGCcGCGCGuauggccGCCGGCcacgaGAGCGa -3'
miRNA:   3'- ggaCCAAUGuCGCGC-------CGGCCG-----CUCGU- -5'
29964 3' -59.6 NC_006273.1 + 19410 1.1 0.001988
Target:  5'- gCCUGGUUACAGCGCGGCCGGCGAGCAa -3'
miRNA:   3'- -GGACCAAUGUCGCGCCGGCCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 21554 0.68 0.775129
Target:  5'- --aGGacgGCGGCGCGGCgcagCGGCuGAGCc -3'
miRNA:   3'- ggaCCaa-UGUCGCGCCG----GCCG-CUCGu -5'
29964 3' -59.6 NC_006273.1 + 23426 0.66 0.856665
Target:  5'- --gGGUcUACAGCaccGUGGCCGuGCaGGGCAc -3'
miRNA:   3'- ggaCCA-AUGUCG---CGCCGGC-CG-CUCGU- -5'
29964 3' -59.6 NC_006273.1 + 25453 0.67 0.790002
Target:  5'- gCCgugGGUUgGCAGC-UGGCCGGCuugaccgcguuguuGAGCGc -3'
miRNA:   3'- -GGa--CCAA-UGUCGcGCCGGCCG--------------CUCGU- -5'
29964 3' -59.6 NC_006273.1 + 27051 0.72 0.528421
Target:  5'- ------aGCGGCGCaagGGCCGGCGAGCc -3'
miRNA:   3'- ggaccaaUGUCGCG---CCGGCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 38075 0.66 0.87098
Target:  5'- --cGGgcaGCAgccgccGCGCGGCCucggcGGCGGGCGc -3'
miRNA:   3'- ggaCCaa-UGU------CGCGCCGG-----CCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 45874 0.7 0.633834
Target:  5'- cCCUGGaacucucacACAGCGCGGC-GGcCGGGCc -3'
miRNA:   3'- -GGACCaa-------UGUCGCGCCGgCC-GCUCGu -5'
29964 3' -59.6 NC_006273.1 + 56427 0.69 0.67256
Target:  5'- aCCUGGUgucGCGGCGuCGGUagaGGCuuGCGg -3'
miRNA:   3'- -GGACCAa--UGUCGC-GCCGg--CCGcuCGU- -5'
29964 3' -59.6 NC_006273.1 + 61256 0.68 0.748097
Target:  5'- cCCaGGUccagccacUGCAGCGCGGCgCGcGCG-GCc -3'
miRNA:   3'- -GGaCCA--------AUGUCGCGCCG-GC-CGCuCGu -5'
29964 3' -59.6 NC_006273.1 + 63166 0.74 0.421747
Target:  5'- cCUUGcGUccgucucGCGGCGCGGCCGGCGcGGCc -3'
miRNA:   3'- -GGAC-CAa------UGUCGCGCCGGCCGC-UCGu -5'
29964 3' -59.6 NC_006273.1 + 64071 0.66 0.856665
Target:  5'- gCUGaGcUGCGGCcaucagagcaGCGGCgGgGCGAGCAc -3'
miRNA:   3'- gGAC-CaAUGUCG----------CGCCGgC-CGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 64826 0.66 0.863917
Target:  5'- gCCUGGagucGCGGUuCGGCCGGacCGuGCAc -3'
miRNA:   3'- -GGACCaa--UGUCGcGCCGGCC--GCuCGU- -5'
29964 3' -59.6 NC_006273.1 + 66760 0.67 0.817786
Target:  5'- gCUGGUgcgcgacccggGCAGcCGCGGCuCGGCGcugacacuGGCc -3'
miRNA:   3'- gGACCAa----------UGUC-GCGCCG-GCCGC--------UCGu -5'
29964 3' -59.6 NC_006273.1 + 69314 0.68 0.736115
Target:  5'- -gUGGUagacgucuucggcaUGCGGCaaaucgucacGCaGGCCGGCGAGCc -3'
miRNA:   3'- ggACCA--------------AUGUCG----------CG-CCGGCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 72615 0.7 0.643535
Target:  5'- aCUGGUUACGGUGguauaCGGCCaaaucagcGCGGGCGu -3'
miRNA:   3'- gGACCAAUGUCGC-----GCCGGc-------CGCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.