miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29964 3' -59.6 NC_006273.1 + 72660 0.66 0.84162
Target:  5'- gCUUGGcgcguagUAguGCuaGGCaCGGCGAGCu -3'
miRNA:   3'- -GGACCa------AUguCGcgCCG-GCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 73736 0.66 0.87098
Target:  5'- gCCaUGGgugGCGGCgGCGGCCgaGGCccGGCAg -3'
miRNA:   3'- -GG-ACCaa-UGUCG-CGCCGG--CCGc-UCGU- -5'
29964 3' -59.6 NC_006273.1 + 73858 0.66 0.87098
Target:  5'- cCCgccGUUcGCgugAGCGCGGCCGacauGCGGGCGc -3'
miRNA:   3'- -GGac-CAA-UG---UCGCGCCGGC----CGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 82379 0.66 0.87098
Target:  5'- uUCUGGggACGuGuCGCGGCCa--GAGCAu -3'
miRNA:   3'- -GGACCaaUGU-C-GCGCCGGccgCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 82829 0.66 0.84162
Target:  5'- aCCUGGgcuacugcUGCAG-GUGGCCGaGCGccugGGCGc -3'
miRNA:   3'- -GGACCa-------AUGUCgCGCCGGC-CGC----UCGU- -5'
29964 3' -59.6 NC_006273.1 + 93568 0.67 0.801128
Target:  5'- gCCUGGgcaacuugaGCGGCgGCGGCCuGCGcGGCc -3'
miRNA:   3'- -GGACCaa-------UGUCG-CGCCGGcCGC-UCGu -5'
29964 3' -59.6 NC_006273.1 + 99766 0.69 0.701318
Target:  5'- uCUUGGaucacguCGGCGUaacGGCCGGCGuGCGu -3'
miRNA:   3'- -GGACCaau----GUCGCG---CCGGCCGCuCGU- -5'
29964 3' -59.6 NC_006273.1 + 105067 0.67 0.804505
Target:  5'- gCCUGGUggACauggacugugagaaaAGCGCguacaugcucgaGGCCGGCGcGGCu -3'
miRNA:   3'- -GGACCAa-UG---------------UCGCG------------CCGGCCGC-UCGu -5'
29964 3' -59.6 NC_006273.1 + 105446 0.69 0.701318
Target:  5'- aCgUGGUaggACAGCGCGcGCCcGGCGGuCAc -3'
miRNA:   3'- -GgACCAa--UGUCGCGC-CGG-CCGCUcGU- -5'
29964 3' -59.6 NC_006273.1 + 109320 0.68 0.738892
Target:  5'- gCUGGauccgGCA-CGCGGCCGGCGuAGa- -3'
miRNA:   3'- gGACCaa---UGUcGCGCCGGCCGC-UCgu -5'
29964 3' -59.6 NC_006273.1 + 110926 0.68 0.775129
Target:  5'- gCUGGaccGCgAGCGCaGcGUCGGCGAGCc -3'
miRNA:   3'- gGACCaa-UG-UCGCG-C-CGGCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 111330 0.7 0.653228
Target:  5'- gCCUGGccgcAUAGCGCGGCCGcGCcgcuGGGUu -3'
miRNA:   3'- -GGACCaa--UGUCGCGCCGGC-CG----CUCGu -5'
29964 3' -59.6 NC_006273.1 + 113524 0.68 0.775129
Target:  5'- cCCgGGggGC-GCGCGGgCGGCGAa-- -3'
miRNA:   3'- -GGaCCaaUGuCGCGCCgGCCGCUcgu -5'
29964 3' -59.6 NC_006273.1 + 114511 0.69 0.691774
Target:  5'- uCCUcGGcgACGGCGU-GCaCGGCGGGCGu -3'
miRNA:   3'- -GGA-CCaaUGUCGCGcCG-GCCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 116210 0.68 0.775129
Target:  5'- cCCaGG-UGCAGCuGCGcGCCGGUcucuuuccacgGAGCAa -3'
miRNA:   3'- -GGaCCaAUGUCG-CGC-CGGCCG-----------CUCGU- -5'
29964 3' -59.6 NC_006273.1 + 116852 0.68 0.75721
Target:  5'- aCgUGGcuuugUGCAGCGUgGGUCGGCGucGCGg -3'
miRNA:   3'- -GgACCa----AUGUCGCG-CCGGCCGCu-CGU- -5'
29964 3' -59.6 NC_006273.1 + 118624 0.69 0.720241
Target:  5'- gCUGG--AgAGCGagaGGCCGGCGuAGCu -3'
miRNA:   3'- gGACCaaUgUCGCg--CCGGCCGC-UCGu -5'
29964 3' -59.6 NC_006273.1 + 124421 0.67 0.801128
Target:  5'- --cGGgcgACAcguGCuGCGGCCGcGCGGGCGu -3'
miRNA:   3'- ggaCCaa-UGU---CG-CGCCGGC-CGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 133124 0.67 0.78392
Target:  5'- gCUGGagcACuGCGUggGGCUGGCGGGUg -3'
miRNA:   3'- gGACCaa-UGuCGCG--CCGGCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 138158 0.69 0.720241
Target:  5'- -aUGGcgGCGGCcaCGGCCuGCGGGCAg -3'
miRNA:   3'- ggACCaaUGUCGc-GCCGGcCGCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.