miRNA display CGI


Results 61 - 80 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29964 3' -59.6 NC_006273.1 + 185288 0.7 0.653228
Target:  5'- gCUGGaga-AGCGCaGcGUCGGCGAGCGa -3'
miRNA:   3'- gGACCaaugUCGCG-C-CGGCCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 189313 0.66 0.863917
Target:  5'- aCCgcGGcaccUGCGGCGuCGGCgGGUGGGUg -3'
miRNA:   3'- -GGa-CCa---AUGUCGC-GCCGgCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 190127 0.67 0.809529
Target:  5'- gCU-GUUGCGGCGCGagcaGCCGcCGGGCGg -3'
miRNA:   3'- gGAcCAAUGUCGCGC----CGGCcGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 193811 0.66 0.863917
Target:  5'- --aGGcUAUGGCGCGGC-GGCGAcaGCGc -3'
miRNA:   3'- ggaCCaAUGUCGCGCCGgCCGCU--CGU- -5'
29964 3' -59.6 NC_006273.1 + 195817 0.66 0.863917
Target:  5'- cCCUcGGUcgcgGCcGCGgGGCCGGaGGGCc -3'
miRNA:   3'- -GGA-CCAa---UGuCGCgCCGGCCgCUCGu -5'
29964 3' -59.6 NC_006273.1 + 196849 0.75 0.397143
Target:  5'- gCUGGguugcGCGGCGgGGCCGGCGA-CGg -3'
miRNA:   3'- gGACCaa---UGUCGCgCCGGCCGCUcGU- -5'
29964 3' -59.6 NC_006273.1 + 198172 0.67 0.817786
Target:  5'- gCCUGGgcACGcGCGuCGGCC-GCGucGCAa -3'
miRNA:   3'- -GGACCaaUGU-CGC-GCCGGcCGCu-CGU- -5'
29964 3' -59.6 NC_006273.1 + 199404 0.68 0.775129
Target:  5'- gCCUGGacccACaAGCGCccgaaGCCGcGCGAGCGu -3'
miRNA:   3'- -GGACCaa--UG-UCGCGc----CGGC-CGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 202544 0.8 0.186517
Target:  5'- gUUGGgaccGCAGCGUGGCCGGCGuGGCGg -3'
miRNA:   3'- gGACCaa--UGUCGCGCCGGCCGC-UCGU- -5'
29964 3' -59.6 NC_006273.1 + 204199 0.67 0.801128
Target:  5'- gCCUGG--AC-GC-CGGCCGGCaaugGAGCAc -3'
miRNA:   3'- -GGACCaaUGuCGcGCCGGCCG----CUCGU- -5'
29964 3' -59.6 NC_006273.1 + 204318 0.68 0.766223
Target:  5'- gCUGGUg--AGCGCgaaGGCCGGCauGGGUAu -3'
miRNA:   3'- gGACCAaugUCGCG---CCGGCCG--CUCGU- -5'
29964 3' -59.6 NC_006273.1 + 204695 0.66 0.849231
Target:  5'- gCC-GGccUugGGUGUcGCCGGCGAGCc -3'
miRNA:   3'- -GGaCCa-AugUCGCGcCGGCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 210663 0.67 0.792589
Target:  5'- gCCgGGaugu-GCGCcaggaGGCCGGCGAGUAa -3'
miRNA:   3'- -GGaCCaauguCGCG-----CCGGCCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 211178 0.72 0.5378
Target:  5'- aUUGGUggagACGGC-CGGCgCGGCGGGUg -3'
miRNA:   3'- gGACCAa---UGUCGcGCCG-GCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 216372 0.71 0.556723
Target:  5'- uUCUGGUugucuUGCAGCGC-GCCcGUGGGCAg -3'
miRNA:   3'- -GGACCA-----AUGUCGCGcCGGcCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 226113 0.7 0.629953
Target:  5'- gCCUGGUaaccagaguacgugUACgguccucgcagguGGCGCGGUaguUGGCGAGCu -3'
miRNA:   3'- -GGACCA--------------AUG-------------UCGCGCCG---GCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 229131 0.72 0.528421
Target:  5'- gCUGGUUGUuuCGCcGCCGGCGAGCu -3'
miRNA:   3'- gGACCAAUGucGCGcCGGCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 230857 0.69 0.720241
Target:  5'- uCCUGGggaACGGgucgGCGGCCGGUcGGCu -3'
miRNA:   3'- -GGACCaa-UGUCg---CGCCGGCCGcUCGu -5'
29964 3' -59.6 NC_006273.1 + 232968 0.66 0.87098
Target:  5'- --cGGgcaGCAgccgccGCGCGGCCucggcGGCGGGCGc -3'
miRNA:   3'- ggaCCaa-UGU------CGCGCCGG-----CCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 233053 0.66 0.849231
Target:  5'- --cGGUgaaGCAGCGUGGC-GGCGAaagacGCGa -3'
miRNA:   3'- ggaCCAa--UGUCGCGCCGgCCGCU-----CGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.