miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29964 3' -59.6 NC_006273.1 + 176812 0.66 0.863917
Target:  5'- gCUGcacauCGGCGUGGCUGGCuuGCAc -3'
miRNA:   3'- gGACcaau-GUCGCGCCGGCCGcuCGU- -5'
29964 3' -59.6 NC_006273.1 + 170819 0.69 0.686026
Target:  5'- cCCUGGUggcagcugGCcugugugacuuucauGGCGaGGCCGGCG-GCAg -3'
miRNA:   3'- -GGACCAa-------UG---------------UCGCgCCGGCCGCuCGU- -5'
29964 3' -59.6 NC_006273.1 + 170608 0.67 0.801128
Target:  5'- gUCUGuagaccgGCAGcCGCccGCCGGCGGGCAg -3'
miRNA:   3'- -GGACcaa----UGUC-GCGc-CGGCCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 169807 0.66 0.84162
Target:  5'- gUUGGUaGCGGCccagGGCCGGCaGGGCc -3'
miRNA:   3'- gGACCAaUGUCGcg--CCGGCCG-CUCGu -5'
29964 3' -59.6 NC_006273.1 + 167324 0.67 0.801128
Target:  5'- --cGGcgGCAGCgGCGGCCacGGCG-GCGc -3'
miRNA:   3'- ggaCCaaUGUCG-CGCCGG--CCGCuCGU- -5'
29964 3' -59.6 NC_006273.1 + 167238 0.69 0.676414
Target:  5'- gCUGGUaaggucgaucauggGCGGCGUGGUgaccguggcggUGGCGGGCAu -3'
miRNA:   3'- gGACCAa-------------UGUCGCGCCG-----------GCCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 167186 0.66 0.87098
Target:  5'- --cGGgcGCAGCGgccgcggaGGCCGGCGuaaacAGCGu -3'
miRNA:   3'- ggaCCaaUGUCGCg-------CCGGCCGC-----UCGU- -5'
29964 3' -59.6 NC_006273.1 + 161873 0.68 0.766223
Target:  5'- gUCUGGUcaACuGCGUGGaCGGCGAugGCAa -3'
miRNA:   3'- -GGACCAa-UGuCGCGCCgGCCGCU--CGU- -5'
29964 3' -59.6 NC_006273.1 + 161787 0.68 0.729605
Target:  5'- --aGGgaagGCGGCaGCGGCagCGGCGGGCc -3'
miRNA:   3'- ggaCCaa--UGUCG-CGCCG--GCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 160116 0.66 0.833838
Target:  5'- aCCUGGUaugagGCGGCcgccGCGGC-GGCcAGCGc -3'
miRNA:   3'- -GGACCAa----UGUCG----CGCCGgCCGcUCGU- -5'
29964 3' -59.6 NC_006273.1 + 159795 0.7 0.643535
Target:  5'- --aGGUUACAGCGCgugucgauGGCCagcGGCGcGCAc -3'
miRNA:   3'- ggaCCAAUGUCGCG--------CCGG---CCGCuCGU- -5'
29964 3' -59.6 NC_006273.1 + 158232 0.68 0.748097
Target:  5'- --cGGgcGC-GCGuCGGCCGGCGAcgGCGg -3'
miRNA:   3'- ggaCCaaUGuCGC-GCCGGCCGCU--CGU- -5'
29964 3' -59.6 NC_006273.1 + 155553 0.69 0.67256
Target:  5'- cCCgaGGUggUGCAGCGCGGCCuuucGCG-GCu -3'
miRNA:   3'- -GGa-CCA--AUGUCGCGCCGGc---CGCuCGu -5'
29964 3' -59.6 NC_006273.1 + 153614 0.69 0.701318
Target:  5'- --cGGUcGCGG-GUGGCCGGCGucAGCGu -3'
miRNA:   3'- ggaCCAaUGUCgCGCCGGCCGC--UCGU- -5'
29964 3' -59.6 NC_006273.1 + 147568 0.7 0.653228
Target:  5'- --cGGgaGCAGCGgGGgCGGCGggGGCAg -3'
miRNA:   3'- ggaCCaaUGUCGCgCCgGCCGC--UCGU- -5'
29964 3' -59.6 NC_006273.1 + 145310 0.69 0.701318
Target:  5'- aCCUGGUgggcUGCGccGCGgGGCUGuGCGAGg- -3'
miRNA:   3'- -GGACCA----AUGU--CGCgCCGGC-CGCUCgu -5'
29964 3' -59.6 NC_006273.1 + 144309 0.69 0.71081
Target:  5'- aUCUGGcgGCGuuguGCGCGG-CGGUGGGCu -3'
miRNA:   3'- -GGACCaaUGU----CGCGCCgGCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 144190 0.7 0.662905
Target:  5'- cCCUGGa-GC-GCGUGGCCGaGCGGuGCGa -3'
miRNA:   3'- -GGACCaaUGuCGCGCCGGC-CGCU-CGU- -5'
29964 3' -59.6 NC_006273.1 + 142766 0.72 0.547236
Target:  5'- gCCUGauccGCAcGCGCGccGCUGGCGAGCAa -3'
miRNA:   3'- -GGACcaa-UGU-CGCGC--CGGCCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 140720 0.75 0.358247
Target:  5'- -gUGGUggcgGCGGCGgGGCCGGCGcuuguGCGg -3'
miRNA:   3'- ggACCAa---UGUCGCgCCGGCCGCu----CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.