miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29964 3' -59.6 NC_006273.1 + 113524 0.68 0.775129
Target:  5'- cCCgGGggGC-GCGCGGgCGGCGAa-- -3'
miRNA:   3'- -GGaCCaaUGuCGCGCCgGCCGCUcgu -5'
29964 3' -59.6 NC_006273.1 + 155553 0.69 0.67256
Target:  5'- cCCgaGGUggUGCAGCGCGGCCuuucGCG-GCu -3'
miRNA:   3'- -GGa-CCA--AUGUCGCGCCGGc---CGCuCGu -5'
29964 3' -59.6 NC_006273.1 + 167238 0.69 0.676414
Target:  5'- gCUGGUaaggucgaucauggGCGGCGUGGUgaccguggcggUGGCGGGCAu -3'
miRNA:   3'- gGACCAa-------------UGUCGCGCCG-----------GCCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 138158 0.69 0.720241
Target:  5'- -aUGGcgGCGGCcaCGGCCuGCGGGCAg -3'
miRNA:   3'- ggACCaaUGUCGc-GCCGGcCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 69314 0.68 0.736115
Target:  5'- -gUGGUagacgucuucggcaUGCGGCaaaucgucacGCaGGCCGGCGAGCc -3'
miRNA:   3'- ggACCA--------------AUGUCG----------CG-CCGGCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 61256 0.68 0.748097
Target:  5'- cCCaGGUccagccacUGCAGCGCGGCgCGcGCG-GCc -3'
miRNA:   3'- -GGaCCA--------AUGUCGCGCCG-GC-CGCuCGu -5'
29964 3' -59.6 NC_006273.1 + 116852 0.68 0.75721
Target:  5'- aCgUGGcuuugUGCAGCGUgGGUCGGCGucGCGg -3'
miRNA:   3'- -GgACCa----AUGUCGCG-CCGGCCGCu-CGU- -5'
29964 3' -59.6 NC_006273.1 + 161873 0.68 0.766223
Target:  5'- gUCUGGUcaACuGCGUGGaCGGCGAugGCAa -3'
miRNA:   3'- -GGACCAa-UGuCGCGCCgGCCGCU--CGU- -5'
29964 3' -59.6 NC_006273.1 + 21554 0.68 0.775129
Target:  5'- --aGGacgGCGGCGCGGCgcagCGGCuGAGCc -3'
miRNA:   3'- ggaCCaa-UGUCGCGCCG----GCCG-CUCGu -5'
29964 3' -59.6 NC_006273.1 + 144190 0.7 0.662905
Target:  5'- cCCUGGa-GC-GCGUGGCCGaGCGGuGCGa -3'
miRNA:   3'- -GGACCaaUGuCGCGCCGGC-CGCU-CGU- -5'
29964 3' -59.6 NC_006273.1 + 111330 0.7 0.653228
Target:  5'- gCCUGGccgcAUAGCGCGGCCGcGCcgcuGGGUu -3'
miRNA:   3'- -GGACCaa--UGUCGCGCCGGC-CG----CUCGu -5'
29964 3' -59.6 NC_006273.1 + 72615 0.7 0.643535
Target:  5'- aCUGGUUACGGUGguauaCGGCCaaaucagcGCGGGCGu -3'
miRNA:   3'- gGACCAAUGUCGC-----GCCGGc-------CGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 196849 0.75 0.397143
Target:  5'- gCUGGguugcGCGGCGgGGCCGGCGA-CGg -3'
miRNA:   3'- gGACCaa---UGUCGCgCCGGCCGCUcGU- -5'
29964 3' -59.6 NC_006273.1 + 63166 0.74 0.421747
Target:  5'- cCUUGcGUccgucucGCGGCGCGGCCGGCGcGGCc -3'
miRNA:   3'- -GGAC-CAa------UGUCGCGCCGGCCGC-UCGu -5'
29964 3' -59.6 NC_006273.1 + 27051 0.72 0.528421
Target:  5'- ------aGCGGCGCaagGGCCGGCGAGCc -3'
miRNA:   3'- ggaccaaUGUCGCG---CCGGCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 229131 0.72 0.528421
Target:  5'- gCUGGUUGUuuCGCcGCCGGCGAGCu -3'
miRNA:   3'- gGACCAAUGucGCGcCGGCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 211178 0.72 0.5378
Target:  5'- aUUGGUggagACGGC-CGGCgCGGCGGGUg -3'
miRNA:   3'- gGACCAa---UGUCGcGCCG-GCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 142766 0.72 0.547236
Target:  5'- gCCUGauccGCAcGCGCGccGCUGGCGAGCAa -3'
miRNA:   3'- -GGACcaa-UGU-CGCGC--CGGCCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 216372 0.71 0.556723
Target:  5'- uUCUGGUugucuUGCAGCGC-GCCcGUGGGCAg -3'
miRNA:   3'- -GGACCA-----AUGUCGCGcCGGcCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 45874 0.7 0.633834
Target:  5'- cCCUGGaacucucacACAGCGCGGC-GGcCGGGCc -3'
miRNA:   3'- -GGACCaa-------UGUCGCGCCGgCC-GCUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.