Results 61 - 80 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29964 | 3' | -59.6 | NC_006273.1 | + | 56427 | 0.69 | 0.67256 |
Target: 5'- aCCUGGUgucGCGGCGuCGGUagaGGCuuGCGg -3' miRNA: 3'- -GGACCAa--UGUCGC-GCCGg--CCGcuCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 185288 | 0.7 | 0.653228 |
Target: 5'- gCUGGaga-AGCGCaGcGUCGGCGAGCGa -3' miRNA: 3'- gGACCaaugUCGCG-C-CGGCCGCUCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 147568 | 0.7 | 0.653228 |
Target: 5'- --cGGgaGCAGCGgGGgCGGCGggGGCAg -3' miRNA: 3'- ggaCCaaUGUCGCgCCgGCCGC--UCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 159795 | 0.7 | 0.643535 |
Target: 5'- --aGGUUACAGCGCgugucgauGGCCagcGGCGcGCAc -3' miRNA: 3'- ggaCCAAUGUCGCG--------CCGG---CCGCuCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 226113 | 0.7 | 0.629953 |
Target: 5'- gCCUGGUaaccagaguacgugUACgguccucgcagguGGCGCGGUaguUGGCGAGCu -3' miRNA: 3'- -GGACCA--------------AUG-------------UCGCGCCG---GCCGCUCGu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 16112 | 0.73 | 0.491561 |
Target: 5'- aCUGGUuccUGCAGgUGCGGCCcGGC-AGCAc -3' miRNA: 3'- gGACCA---AUGUC-GCGCCGG-CCGcUCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 1957 | 0.75 | 0.397143 |
Target: 5'- gCUGGguugcGCGGCGgGGCCGGCGA-CGg -3' miRNA: 3'- gGACCaa---UGUCGCgCCGGCCGCUcGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 202544 | 0.8 | 0.186517 |
Target: 5'- gUUGGgaccGCAGCGUGGCCGGCGuGGCGg -3' miRNA: 3'- gGACCaa--UGUCGCGCCGGCCGC-UCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 170819 | 0.69 | 0.686026 |
Target: 5'- cCCUGGUggcagcugGCcugugugacuuucauGGCGaGGCCGGCG-GCAg -3' miRNA: 3'- -GGACCAa-------UG---------------UCGCgCCGGCCGCuCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 114511 | 0.69 | 0.691774 |
Target: 5'- uCCUcGGcgACGGCGU-GCaCGGCGGGCGu -3' miRNA: 3'- -GGA-CCaaUGUCGCGcCG-GCCGCUCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 99766 | 0.69 | 0.701318 |
Target: 5'- uCUUGGaucacguCGGCGUaacGGCCGGCGuGCGu -3' miRNA: 3'- -GGACCaau----GUCGCG---CCGGCCGCuCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 109320 | 0.68 | 0.738892 |
Target: 5'- gCUGGauccgGCA-CGCGGCCGGCGuAGa- -3' miRNA: 3'- gGACCaa---UGUcGCGCCGGCCGC-UCgu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 161787 | 0.68 | 0.729605 |
Target: 5'- --aGGgaagGCGGCaGCGGCagCGGCGGGCc -3' miRNA: 3'- ggaCCaa--UGUCG-CGCCG--GCCGCUCGu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 230857 | 0.69 | 0.720241 |
Target: 5'- uCCUGGggaACGGgucgGCGGCCGGUcGGCu -3' miRNA: 3'- -GGACCaa-UGUCg---CGCCGGCCGcUCGu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 118624 | 0.69 | 0.720241 |
Target: 5'- gCUGG--AgAGCGagaGGCCGGCGuAGCu -3' miRNA: 3'- gGACCaaUgUCGCg--CCGGCCGC-UCGu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 144309 | 0.69 | 0.71081 |
Target: 5'- aUCUGGcgGCGuuguGCGCGG-CGGUGGGCu -3' miRNA: 3'- -GGACCaaUGU----CGCGCCgGCCGCUCGu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 145310 | 0.69 | 0.701318 |
Target: 5'- aCCUGGUgggcUGCGccGCGgGGCUGuGCGAGg- -3' miRNA: 3'- -GGACCA----AUGU--CGCgCCGGC-CGCUCgu -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 105446 | 0.69 | 0.701318 |
Target: 5'- aCgUGGUaggACAGCGCGcGCCcGGCGGuCAc -3' miRNA: 3'- -GgACCAa--UGUCGCGC-CGG-CCGCUcGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 153614 | 0.69 | 0.701318 |
Target: 5'- --cGGUcGCGG-GUGGCCGGCGucAGCGu -3' miRNA: 3'- ggaCCAaUGUCgCGCCGGCCGC--UCGU- -5' |
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29964 | 3' | -59.6 | NC_006273.1 | + | 19410 | 1.1 | 0.001988 |
Target: 5'- gCCUGGUUACAGCGCGGCCGGCGAGCAa -3' miRNA: 3'- -GGACCAAUGUCGCGCCGGCCGCUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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