miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29964 3' -59.6 NC_006273.1 + 116210 0.68 0.775129
Target:  5'- cCCaGG-UGCAGCuGCGcGCCGGUcucuuuccacgGAGCAa -3'
miRNA:   3'- -GGaCCaAUGUCG-CGC-CGGCCG-----------CUCGU- -5'
29964 3' -59.6 NC_006273.1 + 204318 0.68 0.766223
Target:  5'- gCUGGUg--AGCGCgaaGGCCGGCauGGGUAu -3'
miRNA:   3'- gGACCAaugUCGCG---CCGGCCG--CUCGU- -5'
29964 3' -59.6 NC_006273.1 + 145310 0.69 0.701318
Target:  5'- aCCUGGUgggcUGCGccGCGgGGCUGuGCGAGg- -3'
miRNA:   3'- -GGACCA----AUGU--CGCgCCGGC-CGCUCgu -5'
29964 3' -59.6 NC_006273.1 + 185288 0.7 0.653228
Target:  5'- gCUGGaga-AGCGCaGcGUCGGCGAGCGa -3'
miRNA:   3'- gGACCaaugUCGCG-C-CGGCCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 169807 0.66 0.84162
Target:  5'- gUUGGUaGCGGCccagGGCCGGCaGGGCc -3'
miRNA:   3'- gGACCAaUGUCGcg--CCGGCCG-CUCGu -5'
29964 3' -59.6 NC_006273.1 + 170608 0.67 0.801128
Target:  5'- gUCUGuagaccgGCAGcCGCccGCCGGCGGGCAg -3'
miRNA:   3'- -GGACcaa----UGUC-GCGc-CGGCCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 109320 0.68 0.738892
Target:  5'- gCUGGauccgGCA-CGCGGCCGGCGuAGa- -3'
miRNA:   3'- gGACCaa---UGUcGCGCCGGCCGC-UCgu -5'
29964 3' -59.6 NC_006273.1 + 147568 0.7 0.653228
Target:  5'- --cGGgaGCAGCGgGGgCGGCGggGGCAg -3'
miRNA:   3'- ggaCCaaUGUCGCgCCgGCCGC--UCGU- -5'
29964 3' -59.6 NC_006273.1 + 17395 0.67 0.80028
Target:  5'- --cGGUUGCcGCGCGuauggccGCCGGCcacgaGAGCGa -3'
miRNA:   3'- ggaCCAAUGuCGCGC-------CGGCCG-----CUCGU- -5'
29964 3' -59.6 NC_006273.1 + 159795 0.7 0.643535
Target:  5'- --aGGUUACAGCGCgugucgauGGCCagcGGCGcGCAc -3'
miRNA:   3'- ggaCCAAUGUCGCG--------CCGG---CCGCuCGU- -5'
29964 3' -59.6 NC_006273.1 + 158232 0.68 0.748097
Target:  5'- --cGGgcGC-GCGuCGGCCGGCGAcgGCGg -3'
miRNA:   3'- ggaCCaaUGuCGC-GCCGGCCGCU--CGU- -5'
29964 3' -59.6 NC_006273.1 + 110926 0.68 0.775129
Target:  5'- gCUGGaccGCgAGCGCaGcGUCGGCGAGCc -3'
miRNA:   3'- gGACCaa-UG-UCGCG-C-CGGCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 161787 0.68 0.729605
Target:  5'- --aGGgaagGCGGCaGCGGCagCGGCGGGCc -3'
miRNA:   3'- ggaCCaa--UGUCG-CGCCG--GCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 144309 0.69 0.71081
Target:  5'- aUCUGGcgGCGuuguGCGCGG-CGGUGGGCu -3'
miRNA:   3'- -GGACCaaUGU----CGCGCCgGCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 99766 0.69 0.701318
Target:  5'- uCUUGGaucacguCGGCGUaacGGCCGGCGuGCGu -3'
miRNA:   3'- -GGACCaau----GUCGCG---CCGGCCGCuCGU- -5'
29964 3' -59.6 NC_006273.1 + 56427 0.69 0.67256
Target:  5'- aCCUGGUgucGCGGCGuCGGUagaGGCuuGCGg -3'
miRNA:   3'- -GGACCAa--UGUCGC-GCCGg--CCGcuCGU- -5'
29964 3' -59.6 NC_006273.1 + 64071 0.66 0.856665
Target:  5'- gCUGaGcUGCGGCcaucagagcaGCGGCgGgGCGAGCAc -3'
miRNA:   3'- gGAC-CaAUGUCG----------CGCCGgC-CGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 204695 0.66 0.849231
Target:  5'- gCC-GGccUugGGUGUcGCCGGCGAGCc -3'
miRNA:   3'- -GGaCCa-AugUCGCGcCGGCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 14981 0.67 0.825891
Target:  5'- aCCgGGUUACGGCacggugauuauGCGGCugaugaaaaCGGUGcAGCAg -3'
miRNA:   3'- -GGaCCAAUGUCG-----------CGCCG---------GCCGC-UCGU- -5'
29964 3' -59.6 NC_006273.1 + 93568 0.67 0.801128
Target:  5'- gCCUGGgcaacuugaGCGGCgGCGGCCuGCGcGGCc -3'
miRNA:   3'- -GGACCaa-------UGUCG-CGCCGGcCGC-UCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.