miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29964 3' -59.6 NC_006273.1 + 176812 0.66 0.863917
Target:  5'- gCUGcacauCGGCGUGGCUGGCuuGCAc -3'
miRNA:   3'- gGACcaau-GUCGCGCCGGCCGcuCGU- -5'
29964 3' -59.6 NC_006273.1 + 17395 0.67 0.80028
Target:  5'- --cGGUUGCcGCGCGuauggccGCCGGCcacgaGAGCGa -3'
miRNA:   3'- ggaCCAAUGuCGCGC-------CGGCCG-----CUCGU- -5'
29964 3' -59.6 NC_006273.1 + 25453 0.67 0.790002
Target:  5'- gCCgugGGUUgGCAGC-UGGCCGGCuugaccgcguuguuGAGCGc -3'
miRNA:   3'- -GGa--CCAA-UGUCGcGCCGGCCG--------------CUCGU- -5'
29964 3' -59.6 NC_006273.1 + 195817 0.66 0.863917
Target:  5'- cCCUcGGUcgcgGCcGCGgGGCCGGaGGGCc -3'
miRNA:   3'- -GGA-CCAa---UGuCGCgCCGGCCgCUCGu -5'
29964 3' -59.6 NC_006273.1 + 142766 0.72 0.547236
Target:  5'- gCCUGauccGCAcGCGCGccGCUGGCGAGCAa -3'
miRNA:   3'- -GGACcaa-UGU-CGCGC--CGGCCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 211178 0.72 0.5378
Target:  5'- aUUGGUggagACGGC-CGGCgCGGCGGGUg -3'
miRNA:   3'- gGACCAa---UGUCGcGCCG-GCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 63166 0.74 0.421747
Target:  5'- cCUUGcGUccgucucGCGGCGCGGCCGGCGcGGCc -3'
miRNA:   3'- -GGAC-CAa------UGUCGCGCCGGCCGC-UCGu -5'
29964 3' -59.6 NC_006273.1 + 111330 0.7 0.653228
Target:  5'- gCCUGGccgcAUAGCGCGGCCGcGCcgcuGGGUu -3'
miRNA:   3'- -GGACCaa--UGUCGCGCCGGC-CG----CUCGu -5'
29964 3' -59.6 NC_006273.1 + 144190 0.7 0.662905
Target:  5'- cCCUGGa-GC-GCGUGGCCGaGCGGuGCGa -3'
miRNA:   3'- -GGACCaaUGuCGCGCCGGC-CGCU-CGU- -5'
29964 3' -59.6 NC_006273.1 + 155553 0.69 0.67256
Target:  5'- cCCgaGGUggUGCAGCGCGGCCuuucGCG-GCu -3'
miRNA:   3'- -GGa-CCA--AUGUCGCGCCGGc---CGCuCGu -5'
29964 3' -59.6 NC_006273.1 + 72660 0.66 0.84162
Target:  5'- gCUUGGcgcguagUAguGCuaGGCaCGGCGAGCu -3'
miRNA:   3'- -GGACCa------AUguCGcgCCG-GCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 66760 0.67 0.817786
Target:  5'- gCUGGUgcgcgacccggGCAGcCGCGGCuCGGCGcugacacuGGCc -3'
miRNA:   3'- gGACCAa----------UGUC-GCGCCG-GCCGC--------UCGu -5'
29964 3' -59.6 NC_006273.1 + 105067 0.67 0.804505
Target:  5'- gCCUGGUggACauggacugugagaaaAGCGCguacaugcucgaGGCCGGCGcGGCu -3'
miRNA:   3'- -GGACCAa-UG---------------UCGCG------------CCGGCCGC-UCGu -5'
29964 3' -59.6 NC_006273.1 + 167324 0.67 0.801128
Target:  5'- --cGGcgGCAGCgGCGGCCacGGCG-GCGc -3'
miRNA:   3'- ggaCCaaUGUCG-CGCCGG--CCGCuCGU- -5'
29964 3' -59.6 NC_006273.1 + 204199 0.67 0.801128
Target:  5'- gCCUGG--AC-GC-CGGCCGGCaaugGAGCAc -3'
miRNA:   3'- -GGACCaaUGuCGcGCCGGCCG----CUCGU- -5'
29964 3' -59.6 NC_006273.1 + 210663 0.67 0.792589
Target:  5'- gCCgGGaugu-GCGCcaggaGGCCGGCGAGUAa -3'
miRNA:   3'- -GGaCCaauguCGCG-----CCGGCCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 124421 0.67 0.801128
Target:  5'- --cGGgcgACAcguGCuGCGGCCGcGCGGGCGu -3'
miRNA:   3'- ggaCCaa-UGU---CG-CGCCGGC-CGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 133124 0.67 0.78392
Target:  5'- gCUGGagcACuGCGUggGGCUGGCGGGUg -3'
miRNA:   3'- gGACCaa-UGuCGCG--CCGGCCGCUCGu -5'
29964 3' -59.6 NC_006273.1 + 138158 0.69 0.720241
Target:  5'- -aUGGcgGCGGCcaCGGCCuGCGGGCAg -3'
miRNA:   3'- ggACCaaUGUCGc-GCCGGcCGCUCGU- -5'
29964 3' -59.6 NC_006273.1 + 167238 0.69 0.676414
Target:  5'- gCUGGUaaggucgaucauggGCGGCGUGGUgaccguggcggUGGCGGGCAu -3'
miRNA:   3'- gGACCAa-------------UGUCGCGCCG-----------GCCGCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.